View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3497_high_2 (Length: 499)

Name: NF3497_high_2
Description: NF3497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3497_high_2
NF3497_high_2
[»] chr1 (4 HSPs)
chr1 (15-499)||(7298540-7299032)
chr1 (15-212)||(47124620-47124819)
chr1 (170-203)||(6815264-6815297)
chr1 (170-203)||(28700026-28700059)
[»] chr4 (7 HSPs)
chr4 (15-212)||(11882873-11883067)
chr4 (15-212)||(33018514-33018715)
chr4 (15-213)||(35347149-35347347)
chr4 (15-212)||(33432739-33432932)
chr4 (170-206)||(23668224-23668260)
chr4 (171-207)||(52106253-52106289)
chr4 (161-212)||(23669246-23669297)
[»] chr3 (4 HSPs)
chr3 (15-209)||(12008925-12009126)
chr3 (15-146)||(47669117-47669248)
chr3 (15-138)||(51985886-51986008)
chr3 (161-212)||(51985799-51985850)
[»] chr8 (6 HSPs)
chr8 (15-145)||(34053192-34053322)
chr8 (161-211)||(34053125-34053175)
chr8 (161-212)||(9370102-9370153)
chr8 (170-203)||(9369095-9369128)
chr8 (170-203)||(9404158-9404191)
chr8 (170-203)||(9406319-9406352)
[»] chr6 (1 HSPs)
chr6 (15-210)||(6535153-6535350)
[»] chr7 (4 HSPs)
chr7 (15-134)||(26761474-26761592)
chr7 (161-213)||(47817419-47817471)
chr7 (171-207)||(41806607-41806643)
chr7 (170-206)||(47818448-47818484)
[»] chr5 (1 HSPs)
chr5 (23-212)||(43070065-43070260)
[»] chr2 (1 HSPs)
chr2 (170-203)||(11873284-11873317)


Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 499
Target Start/End: Original strand, 7298540 - 7299032
Alignment:
Q  15 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  7298540 cagagagggatattagagaaaggtgaaagctcatgagagttgagaaggaagaagacaaaggaaaatataattaagtgtatttgatctatggtgtgtttaa 7298639  T
Q  115 ccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnnn-------gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacg 207  Q
    ||||||||||||||||||||||||| || |||                     ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  7298640 ccaatctaacggttaggaaatgtcataacgtcaaaaaaaaaaaacaaaaaaaagaggtcatgcacggtaggagacctatataggtctcctaccctaaacg 7298739  T
Q  208 ccgcctagtttcgatagtaaacttcaagtttgaatcaaattttaaaatgaaaatcaattcttattgaaatcaccctaaataagtcaaaattttgtgtatg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7298740 ccgcctagtttcgatagtaaacttcaagtttgaatcaaattttaaaatcaaaatcaattcttattgaaatcaccctaaataagtcaaaattttgtgtatg 7298839  T
Q  308 aaatcacttttatctctatctaccttaaaacc-aaatacacacctagacatagagaggacacagaaatcaagttgcaagttggcatgaaagcatgcctgt 406  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7298840 aaatcccttttatctctatctaccttaaaaccaaaatacacacctagacatagagaggacacagaaatcaagttgcaagttggcatgaaagcatgcctgt 7298939  T
Q  407 gactgtgtaatgtatcccatatccttatccttctttggcgctgctgtctgtatatggcagaatccttctctttctcagctacatatcagactc 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7298940 gactgtgtaatgtatcccatatccttatccttctttggcgctgctgtctgtatatggcagaatccttctctttctcagctacatatcagactc 7299032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 47124819 - 47124620
Alignment:
Q  15 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||| ||    
T  47124819 cagagagggatattagagaaaggtaaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaggtgtatttgatctatggtgtgttcaa 47124720  T
Q  115 ccaatctaacggttaggaaatgtcagaaggtc--nnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 212  Q
    |||||||||||||||||||| ||| |||| ||                |||||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  47124719 ccaatctaacggttaggaaaggtctgaagatcaaaaaaaaaaaaaaaagaggtcatgcacagtagaagatctataaaggtctcccaccctaaacgccgcc 47124620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 6815297 - 6815264
Alignment:
Q  170 cacggtaggagacctataaaggtctcccacccta 203  Q
    ||||||||||||||||| ||||||||||||||||    
T  6815297 cacggtaggagacctatcaaggtctcccacccta 6815264  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 28700026 - 28700059
Alignment:
Q  170 cacggtaggagacctataaaggtctcccacccta 203  Q
    ||||||||||||||||| ||||||||||||||||    
T  28700026 cacggtaggagacctattaaggtctcccacccta 28700059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 11882873 - 11883067
Alignment:
Q  15 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 114  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||    
T  11882873 cagagagggatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgttcaa 11882972  T
Q  115 ccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 212  Q
    |||||||||||||||||||| ||| |||||||              |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11882973 ccaatctaacggttaggaaaagtccgaaggtc---aaaaaaaaaaagaggccatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 11883067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 33018514 - 33018715
Alignment:
Q  15 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 114  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||| ||    
T  33018514 cagagagggatatcaaagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatgatgtgttcaa 33018613  T
Q  115 ccaatctaacggttaggaaatgtcagaaggtc----nnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 210  Q
    ||||||||||| || | ||| |||  ||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33018614 ccaatctaacgattggaaaaggtccaaaggtcaaaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 33018713  T
Q  211 cc 212  Q
    ||    
T  33018714 cc 33018715  T

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Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 35347149 - 35347347
Alignment:
Q  15 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 114  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||| |||||||||    
T  35347149 cagagagggatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaaaataatcaagtgtattcgatctatgatgtgtttaa 35347248  T
Q  115 ccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcct 213  Q
    | ||| |||||||||| ||| |||| || |||               | ||||||||||||||| |||||||||||||||||||||||| |||| ||||    
T  35347249 ctaatttaacggttagaaaaagtcataaagtcaaaaaaaaaaaaaaaaagtcatgcacggtaggggacctataaaggtctcccaccctagacgcagcct 35347347  T

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Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 33432932 - 33432739
Alignment:
Q  15 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 114  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||  ||||||||| |||||||||||||| ||    
T  33432932 cagagagggatat-agagaaaggggaaagctcatgagagttgagagggaagaagacaaatgaaaagataattcagtgtatttaatctatggtgtgttcaa 33432834  T
Q  115 ccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 212  Q
    ||||||||||  ||||||||  || |||| ||               | |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33432833 ccaatctaactattaggaaagatccgaagttcaaaaaaaaaaaa---atgtcatgcacggtaggagatctataaaggtctcccaccctaaacgccgcc 33432739  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 23668260 - 23668224
Alignment:
Q  170 cacggtaggagacctataaaggtctcccaccctaaac 206  Q
    ||||||||||||||||| |||||||||||||||||||    
T  23668260 cacggtaggagacctattaaggtctcccaccctaaac 23668224  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 52106253 - 52106289
Alignment:
Q  171 acggtaggagacctataaaggtctcccaccctaaacg 207  Q
    ||||||||||||||| |||||||||||||||||||||    
T  52106253 acggtaggagacctaaaaaggtctcccaccctaaacg 52106289  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 23669246 - 23669297
Alignment:
Q  161 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 212  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || |||||    
T  23669246 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 23669297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 12009126 - 12008925
Alignment:
Q  15 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  12009126 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaatataatcaagtgtatttgatctatggtgtgtttaa 12009027  T
Q  115 ccaatctaacggttaggaaatgtcagaaggtc-------nnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacg 207  Q
    |||||||||||||||| |||||||||||| ||                     |||||||||||||||||||||||||||||||||||||||||||||||    
T  12009026 ccaatctaacggttagaaaatgtcagaagatcaaaaaaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtctcccaccctaaacg 12008927  T
Q  208 cc 209  Q
    ||    
T  12008926 cc 12008925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 47669117 - 47669248
Alignment:
Q  15 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 114  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||||||    
T  47669117 cagagaggaatatgagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctctggtgtgtttaa 47669216  T
Q  115 ccaatctaacggttaggaaatgtcagaaggtc 146  Q
    ||||||||||||||||||||||| ||||||||    
T  47669217 ccaatctaacggttaggaaatgtgagaaggtc 47669248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 51986008 - 51985886
Alignment:
Q  15 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 114  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||| |||||||    
T  51986008 cagagaggtatat-agagaaaggtgaaagctcatgagagttgagaggaaagaagacaaatgaaaagataatcaagtgtatttgatctatggtatgtttaa 51985910  T
Q  115 ccaatctaacggttaggaaatgtc 138  Q
    ||||||||||||||||||||||||    
T  51985909 ccaatctaacggttaggaaatgtc 51985886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 51985850 - 51985799
Alignment:
Q  161 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 212  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  51985850 gaggtcatgtacggtaggagacctataaagatctcccaccctaaacaccgcc 51985799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 8e-56; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 34053322 - 34053192
Alignment:
Q  15 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 114  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  34053322 cagagagggatatcagagaaaggtaaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaa 34053223  T
Q  115 ccaatctaacggttaggaaatgtcagaaggt 145  Q
    |||||||||||||||||||||||||||||||    
T  34053222 ccaatctaacggttaggaaatgtcagaaggt 34053192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 34053175 - 34053125
Alignment:
Q  161 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgc 211  Q
    ||||| ||||| |||||||||||||||||||| |||||||||| |||||||    
T  34053175 gaggtaatgcatggtaggagacctataaaggtttcccaccctacacgccgc 34053125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 9370102 - 9370153
Alignment:
Q  161 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 212  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || |||||    
T  9370102 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 9370153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 9369128 - 9369095
Alignment:
Q  170 cacggtaggagacctataaaggtctcccacccta 203  Q
    ||||||||||||||||| ||||||||||||||||    
T  9369128 cacggtaggagacctattaaggtctcccacccta 9369095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 9404191 - 9404158
Alignment:
Q  170 cacggtaggagacctataaaggtctcccacccta 203  Q
    ||||||||||||||||| ||||||||||||||||    
T  9404191 cacggtaggagacctattaaggtctcccacccta 9404158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 9406352 - 9406319
Alignment:
Q  170 cacggtaggagacctataaaggtctcccacccta 203  Q
    ||||||||||||||||| ||||||||||||||||    
T  9406352 cacggtaggagacctattaaggtctcccacccta 9406319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 6535153 - 6535350
Alignment:
Q  15 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||||||||| ||||||||| ||    
T  6535153 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttgatctgtggtgtgttcaa 6535252  T
Q  115 ccaatctaacggttaggaaatgtcagaaggtc--nnnnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 210  Q
     |||||||||| |||||||| ||| |||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6535253 tcaatctaacgattaggaaaggtccgaaggtcaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccg 6535350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 26761592 - 26761474
Alignment:
Q  15 cagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaa 114  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  26761592 cagagagggatat-agagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatggtgtgtttaa 26761494  T
Q  115 ccaatctaacggttaggaaa 134  Q
    ||||||||||||||||||||    
T  26761493 ccaatctaacggttaggaaa 26761474  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 47817471 - 47817419
Alignment:
Q  161 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcct 213  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || ||||||    
T  47817471 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcct 47817419  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 41806643 - 41806607
Alignment:
Q  171 acggtaggagacctataaaggtctcccaccctaaacg 207  Q
    |||||||||||||||  ||||||||||||||||||||    
T  41806643 acggtaggagacctaagaaggtctcccaccctaaacg 41806607  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 47818448 - 47818484
Alignment:
Q  170 cacggtaggagacctataaaggtctcccaccctaaac 206  Q
    ||||||||||||||| | |||||||||||||||||||    
T  47818448 cacggtaggagacctgttaaggtctcccaccctaaac 47818484  T

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Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 43070065 - 43070260
Alignment:
Q  23 gatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaattaaaatataataaagtgtatttgatctatggtgtgtttaaccaatcta 122  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||    
T  43070065 gatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatgatgtgtttaaccaatcta 43070164  T
Q  123 acggttaggaaatgtcagaaggtcnnnnnnnnnnnnnn------gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 212  Q
    |||||||||||| ||| ||||||                     ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43070165 acggttaggaaaggtccgaaggttaaaaaaaaaaaaaaaaaaaagaggtcatgtacggtaggagacctataaaggtctcccaccctaaacgccgcc 43070260  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 11873317 - 11873284
Alignment:
Q  170 cacggtaggagacctataaaggtctcccacccta 203  Q
    ||||||||||||||||| ||||||||||||||||    
T  11873317 cacggtaggagacctatcaaggtctcccacccta 11873284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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