View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3497_high_3 (Length: 385)
Name: NF3497_high_3
Description: NF3497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3497_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 82 - 380
Target Start/End: Complemental strand, 17992979 - 17992698
Alignment:
| Q |
82 |
ttaaaagatctttagatgcatttgacctataaatatttacgtacaagttattttcatgataaaagttaaaatgaaatcaaattattttcacactagtaac |
181 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| |
|
|
| T |
17992979 |
ttaaaagacctttagatatatttaacctataaatatttacgtacaagttattttcatgataaaagtta----------------ttttcatactaggaac |
17992896 |
T |
|
| Q |
182 |
aagttgtttttataagtcattataaatggtttatgaaaataagttagaataaactatttcagacatgcgtatattctagacttacaatatctattacgga |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17992895 |
aagttgtttttataagtcattataaatggtttatgaaaataagttagaataaattatttcaggcatgcgtatattctagactgacaatatctattacggg |
17992796 |
T |
|
| Q |
282 |
gagctgtgttacttatcgcgagggactaactcagatagaaaaagcgtggtgcccattccttttttgggaacatgtggacccctcctctttcttctcact |
380 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17992795 |
gagctatgttatttatcgcgagggactaactc-gatagaaaaaatgtgatgcccattccttttttgggaacatgtggacccctcctctttcttctcact |
17992698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 82 - 380
Target Start/End: Complemental strand, 52349886 - 52349605
Alignment:
| Q |
82 |
ttaaaagatctttagatgcatttgacctataaatatttacgtacaagttattttcatgataaaagttaaaatgaaatcaaattattttcacactagtaac |
181 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||| |
|
|
| T |
52349886 |
ttaaaagacctttagatatatttaacctataaatatttacgtacaagttattttcatgataaaagtta----------------ttttcatactaggaac |
52349803 |
T |
|
| Q |
182 |
aagttgtttttataagtcattataaatggtttatgaaaataagttagaataaactatttcagacatgcgtatattctagacttacaatatctattacgga |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52349802 |
aagttgtttttataagtcattataaatggtttatgaaaataagttagaataaattatttcaggcatgcgtatattctagactgacaatatctattacggg |
52349703 |
T |
|
| Q |
282 |
gagctgtgttacttatcgcgagggactaactcagatagaaaaagcgtggtgcccattccttttttgggaacatgtggacccctcctctttcttctcact |
380 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52349702 |
gagctatgttatttatcgcgagggactaactc-gatagaaaaaatgtgatgcccattccttttttgggaacatgtggacccctcctctttcttctcact |
52349605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 52351597 - 52351540
Alignment:
| Q |
21 |
atattgtgcattttaaattctagaataatatttgattatgttaataaaagaaaaatat |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52351597 |
atattgtgcattttaaattctagaataatatttgattatgttaataaaagaaaaatat |
52351540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 115
Target Start/End: Original strand, 18892538 - 18892568
Alignment:
| Q |
85 |
aaagatctttagatgcatttgacctataaat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
18892538 |
aaagatctttagatgcatttgacctataaat |
18892568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University