View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3497_low_1 (Length: 647)
Name: NF3497_low_1
Description: NF3497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3497_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 19 - 634
Target Start/End: Complemental strand, 48483183 - 48482568
Alignment:
| Q |
19 |
actaatttgcatgcttgttttgataactaaatgaattctgtcagggggtataaaaaatgacaattatacaatataannnnnnnnnnnnngtcattccatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
48483183 |
actaatttgcatgcttgttttgataactaaatgaattctgtcggggggtataaaaaatgacaatcatacaatataatttttttatttttgtcattccatt |
48483084 |
T |
|
| Q |
119 |
ccccaacgttatttcattacccaatatgacttatacaaaacactttttactcaagttattggggtccttttctagttgtgttacacttttactcacattc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48483083 |
ccccaacgttatttcattacccaatatgacttatacaaaacactttttactcaagttattggggtccttttctagttgtgttacacttttactcacattc |
48482984 |
T |
|
| Q |
219 |
atttttcctatctttcttgtccgcgttggtgccagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattt |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48482983 |
attttttctatctttcttgtccgcgttggtgccagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattt |
48482884 |
T |
|
| Q |
319 |
tcacgtgatgtgtgcatcaaggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctgctactt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48482883 |
tcacgtgatgtgtgcatcaaggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctgctactt |
48482784 |
T |
|
| Q |
419 |
tttcttctgaatttgctcnnnnnnnggagggcagcaaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttagttacatggct |
518 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48482783 |
tttcttctgaatttgctctttttttggagggcagcaaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttagttacatggct |
48482684 |
T |
|
| Q |
519 |
attacttccgctgctgggaaaatatgttgatattgtttaaatgtacagttgcgttctacagtgaagaaggggactcaaataacacagacgctaatatatt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48482683 |
attacttccgctgctgggaaaatatgttgatattgtttaaatgtacagttgcgttctacagtgaagaaggggactcaaataacacagacgctaatatatt |
48482584 |
T |
|
| Q |
619 |
gtgcagttcacaggtt |
634 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
48482583 |
gcgcagttcacaggtt |
48482568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 10037573 - 10037661
Alignment:
| Q |
251 |
cagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgcatcaag |
339 |
Q |
| |
|
||||| ||||| || ||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||| || ||||| |||||||| |
|
|
| T |
10037573 |
cagacctgtgtaatttgtaaacaaagccatggttcttgtacaagttgttgcaagtgttctactcattttcatgtaatgtgcgcatcaag |
10037661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University