View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3498_low_1 (Length: 289)
Name: NF3498_low_1
Description: NF3498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3498_low_1 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 32086111 - 32086389
Alignment:
| Q |
11 |
cagagagaatgggtatgtcaagggaggctaacttgtggagaatgtcatcaattagggaggtcgggagagtttggatttcaacaagggtaaattgatcagt |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32086111 |
cagagagagtgggtatgtcaagggaggctaacttgtggagaatgtcatcaattagggaggccgggagagtttggatttcaacaagggtaaattgatcagt |
32086210 |
T |
|
| Q |
111 |
aatgagtttgctaatggcttcttccattttatcggctgtggctttcgaacaggtagtttttggattagcccgatgaaaacaccaaagtgttaggaactgg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32086211 |
aatgagtttgctaatggcttcttccattttatcggctgtggctttcgaacatgtagtttttggattagcccgatgaaaacaccaaagtgttaggaactgg |
32086310 |
T |
|
| Q |
211 |
gtaaatttgcaatagttcaaggactagcaacctcctaagaaggaaaaagataatgaaatttagattctttcttgatttc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32086311 |
gtaaatttgcaatagttcaaggactagcaacctcctaagaaggaaaaagataatgaaatttagattctttcttgatttc |
32086389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 32084647 - 32084925
Alignment:
| Q |
12 |
agagagaatgggtatgtcaagggaggctaacttgtggagaatgtcatcaattagggaggtcgggagagtttggatttcaacaagggtaaattgatcagta |
111 |
Q |
| |
|
|||| |||||||||| |||||||| ||||| |||||||||||||| |||||| ||||| || ||||||||| ||||| ||||||| |||||| ||| |
|
|
| T |
32084647 |
agagggaatgggtatttcaagggacgctaatttgtggagaatgtcgtcaattttggaggccgtaagagtttgggtttcaccaagggtggattgattggta |
32084746 |
T |
|
| Q |
112 |
atgagtttgctaatggcttcttccattttatcggctgtggctttcgaacaggtagtttttggattagcccgatgaaaacaccaaagtgttaggaactggg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||| ||| |||| ||||||| ||||||| ||||||||| |||||||| |||||||||| | |
|
|
| T |
32084747 |
gtgagtttgctaatggcttcttccattttattagcggtggattttgaacgagtagtttccagattagctcgatgaaaataccaaagtattaggaactgag |
32084846 |
T |
|
| Q |
212 |
taaatttgcaatagttcaaggacta--gcaacctcctaagaaggaaaaagataatgaaatttagattctttcttgattt |
288 |
Q |
| |
|
||||||||| |||| | ||| ||| |||||||||||||||||| ||||||||| |||| | |||| |||||||| |
|
|
| T |
32084847 |
taaatttgctatagctagagggctaatataacctcctaagaaggaaatagataatgagattttaagtcttgcttgattt |
32084925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University