View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3499_high_10 (Length: 431)
Name: NF3499_high_10
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3499_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 159 - 377
Target Start/End: Original strand, 40733146 - 40733357
Alignment:
| Q |
159 |
tcagaaccaagtgttttcgaagcatatatctcccacaatgaagacaaacatcaagaaatataaagttatcgcatatagtgtgtttacaacgtacaaagcc |
258 |
Q |
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| T |
40733146 |
tcagaaccaagtgttttcgaagcatatatctcccacaatgaagacaaacatcaagaaatataaagttatcgcatatagtgtgtttacaacgtacaaagcc |
40733245 |
T |
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| Q |
259 |
atacatcataaaaaatatctatttgttaagccatgccaattgccaagctgtataagcatagtgattagcacacaaaccagtcaaatgatagaataaacat |
358 |
Q |
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| T |
40733246 |
atacagcataaaaaatatctatttgttaagcca-------tgccaagctgtataagcatagtgattagcacacaaaccagtcaaatgatagaaaaaacat |
40733338 |
T |
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| Q |
359 |
gttatatgaccaaaaacaa |
377 |
Q |
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| T |
40733339 |
gttatatgaccaaaaacaa |
40733357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 40733013 - 40733067
Alignment:
| Q |
19 |
ttaaagacgaggcctgtatacacacaacaatacctaattgacaaagtagagatgt |
73 |
Q |
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| T |
40733013 |
ttaaagacgaggcctggatacacacaacaatacctaattgacaaagtagagatgt |
40733067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 421
Target Start/End: Original strand, 40733345 - 40733376
Alignment:
| Q |
390 |
tgaccaaaaacaaaataattctaatgatgatg |
421 |
Q |
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| T |
40733345 |
tgaccaaaaacaaaataattctaatgatgatg |
40733376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 48753215 - 48753183
Alignment:
| Q |
330 |
acaaaccagtcaaatgatagaataaacatgtta |
362 |
Q |
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| T |
48753215 |
acaaaccagtcaaataatagaataaacatgtta |
48753183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 38462758 - 38462684
Alignment:
| Q |
302 |
caagctgtataagcatagtgatta---gcacacaaaccagtcaaatgatagaataaacatgttatatgaccaaaa |
373 |
Q |
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| T |
38462758 |
caagctttataaacatagtgattattagcacacaaaacagtcaaataatagaataaacatgttatatgaccaaaa |
38462684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 52091089 - 52091157
Alignment:
| Q |
163 |
aaccaagtgttttcgaagcatatatctcccacaatgaagacaaacatcaagaaatataaagttatcgcat |
232 |
Q |
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| T |
52091089 |
aaccaagtgtta-cgatgcatatatctcccaaactgaagataaacatctagaaatataaaattatcgcat |
52091157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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