View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3499_high_11 (Length: 403)
Name: NF3499_high_11
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3499_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 12104342 - 12104714
Alignment:
| Q |
15 |
gaagaacgtttcttgatccttgccaagcaattgtccattggccttgtgtgtggcaagaatctcactggagattttgggttgatttgttccaacctgtgaa |
114 |
Q |
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| T |
12104342 |
gaagaacgtttcttgatccttgccaagcaattgtccattggccttgtgtgtggcaagaatctcactggagattttgggttgatttgttccaacctgtgaa |
12104441 |
T |
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| Q |
115 |
agcaagacacaacattaacattagtatcttttgatcaattttaatattggaatgatgtatactttgcttcaataatatattgtgtgtgagnnnnnnnttc |
214 |
Q |
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| T |
12104442 |
agcaagacacaacattaacattagtaccttttgatcaattttaatattggaatgatgtatactttgcttcaataatatattgtgtgtgagaaaaaaattc |
12104541 |
T |
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| Q |
215 |
atgtgagtagtaaaaagagggagaaaaatatttactcatagttgaggagaaagtggtgaaggaaaactgagatttccagcttagcaagatcatttccagg |
314 |
Q |
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| T |
12104542 |
atgtgagtagtaaaaagagggagaaaaatatttactcatagttgaggagaaagtggtgaaggaaaactgagatttccagcttagcaagatcatttccagg |
12104641 |
T |
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| Q |
315 |
gcacaatctagttcctactccaaatggaaggaactctccagctctgtgcacctcctaagaatcaagatcaacc |
387 |
Q |
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| T |
12104642 |
gcacaatctagttcctactccaaatggaaggaactctccagctctgtgcacctcctaagaatcaagatcaacc |
12104714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 347
Target Start/End: Original strand, 12113361 - 12113437
Alignment:
| Q |
271 |
tgaaggaaaactgagatttccagcttagcaagatcatttccagggcacaatctagttcctactccaaatggaaggaa |
347 |
Q |
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| T |
12113361 |
tgaagaaaaactgctatttccattttggcaagatcattgccaggacacaatctagttcctgctccaaagggaaggaa |
12113437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 12112946 - 12113004
Alignment:
| Q |
18 |
gaacgtttcttgatccttgccaagcaattgtccattggccttgtgtgtggcaagaatct |
76 |
Q |
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| T |
12112946 |
gaacatttcttgacccttcctaagcaattgtccattggccttgtatgtggtaagtatct |
12113004 |
T |
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