View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3499_high_21 (Length: 241)
Name: NF3499_high_21
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3499_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 50964456 - 50964230
Alignment:
| Q |
1 |
aatttggagatactttgctgcctgaaaatcaagagaaagccaa-ttataagactatgaatgaaaagcgtcgatgcataaaacgtgtaccgggtgttatcc |
99 |
Q |
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| T |
50964456 |
aatttggagatactttgctgcctgaaaatcaagagaaagccaaattataagactatgaatgaaaagcgtcgatgcataaaacgtgtaccgggtgttatcc |
50964357 |
T |
|
| Q |
100 |
tctgtagactttgaagcttataagcacaataatgctgcaataacatttgctactttcaatttaatccgtcttgctgcaagccaatacccacaaacaacaa |
199 |
Q |
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| T |
50964356 |
tttatagactttgaagcttataagcacaataatgctgcaataacatttgctactttcaatttaatccatcttgctgcaagccaatacccacaaacaacaa |
50964257 |
T |
|
| Q |
200 |
caccaacgaagcaacataactctcaac |
226 |
Q |
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| T |
50964256 |
caccaacgaagcaacataactctcaac |
50964230 |
T |
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