View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3499_high_23 (Length: 206)
Name: NF3499_high_23
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3499_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 28430380 - 28430547
Alignment:
| Q |
20 |
aggtgggagacaaggtacaaaaattcaaagttggagacaaggtaggtgttgggtgcatggttcaatcctgccactcatgccaaaattgcaacgaaagtct |
119 |
Q |
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| T |
28430380 |
aggtgggagacaaggtacaaaaattcaaagttggagacaaggtaggtgttgggtgcatggttcaatcctgccactcatgccaaaattgcaacgaaagtct |
28430479 |
T |
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| Q |
120 |
cgaaaattactgtccaaaagtgattctcacatacggttccaagaatcttgatggcaccatcacatatg |
187 |
Q |
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| T |
28430480 |
cgaaaattactgtccaaaagtgattctcacatacggttccaagaatcttgatggcaccatcacatatg |
28430547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 13373469 - 13373409
Alignment:
| Q |
43 |
ttcaaagttggagacaaggtaggtgttgggtgcatggttcaatcctgccactcatgccaaa |
103 |
Q |
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| T |
13373469 |
ttcaaagttggagacaaggtaggtgtagggtgcatggttggatcctgccactcatgtcaaa |
13373409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 13379264 - 13379121
Alignment:
| Q |
44 |
tcaaagttggagacaaggtaggtgttgggtgcatggttcaatcctgccactcatgccaaaattgcaacgaaagtctcgaaaattactgtccaaaagtgat |
143 |
Q |
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||||||||||||| | ||| ||||| |||||||||||| ||||||||| ||||| |||| ||| ||| |||||||||||| || |||| |||| |
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| T |
13379264 |
tcaaagttggagatagggttggtgtggggtgcatggttggatcctgccattcatgtcaaagttgtggcgaggatctcgaaaattattgctcaaagatgat |
13379165 |
T |
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| Q |
144 |
tctcacatacggttccaagaatcttgatggcaccatcacatatg |
187 |
Q |
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| T |
13379164 |
tcagacatacagttccaagaatgttgatggcactatcacatatg |
13379121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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