View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3499_high_7 (Length: 461)
Name: NF3499_high_7
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3499_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Complemental strand, 25587883 - 25587467
Alignment:
| Q |
19 |
gctatttctctaatcgtatttaaccaattttattgtcataatattactatttgaaatctatgatatcatggtaaaattagtccattgttgtgagataaaa |
118 |
Q |
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| T |
25587883 |
gctatttctctaatcgtatttaaccaattttattgtcataatattactatttaaaatctatgatatcgtggtaaaattagtccattgttgtgagataaaa |
25587784 |
T |
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| Q |
119 |
cagttcattactgtatagggagaaaaaataagaagaatccaaggaaacaatggaaatttttatttagaaaatgcataaaaattaaataggaagtgaaggg |
218 |
Q |
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| T |
25587783 |
cagttcattattgtatagggagaaaaaataagaagaatccaaggaaacaatggaaatttttatttagaaaatgcataaaaattaaataggaagtgaaggg |
25587684 |
T |
|
| Q |
219 |
ggaccagctgagaggaatggtttgcaaaggaaaatgaagatgagaagtgatagtgaaagtgaagcatacaccattttattgcttcgaaaattaagaagca |
318 |
Q |
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| T |
25587683 |
ggaccagctgagaggaatggtttgcaaaggaaaatgaagatgagaagtgatagtgaaagtgaagcatacaccattttattgcttccaaaattaagaagca |
25587584 |
T |
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| Q |
319 |
atgtgataggaaaataagtaaatgaaaaaagtgaagggcttacagaaaagcattttggcctccttttgggaatgaaagggaatgagagtactggaagtgg |
418 |
Q |
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| T |
25587583 |
atgtgataggaaaataagtaaatgaaaaaagtgaagggcttacagaaaagcattttggcctccttttgggaatgaaagggaatgagagtactggaagtgg |
25587484 |
T |
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| Q |
419 |
aagtgaagaatacacca |
435 |
Q |
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| T |
25587483 |
aagtgaagaatacacca |
25587467 |
T |
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