View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3499_high_9 (Length: 432)
Name: NF3499_high_9
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3499_high_9 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 50964553 - 50964984
Alignment:
| Q |
1 |
atgactcctcaggaagaagaggagtattagatgaattaatgttctgtcttgttaagagtcatgcataaaaaagttgtgttcaaattagagtagtatatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50964553 |
atgactcctcaggaagaagaggagtattagatgaattaatgttctgtcttgttaagagtcatgcataaaaaagttgtgttcaaattagagtagtatatgc |
50964652 |
T |
|
| Q |
101 |
aaattcaaactcatattgaggtcataatacaatgcattggatgacatttgctcaatatttattcatgcttgcaatttgattactttccttgttttctaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
50964653 |
aaattcaaactcatattgaggtcataataaaatgcattggatgacatttgctcaatatttattcatgcttgtaatttgattactttccttgttttctaaa |
50964752 |
T |
|
| Q |
201 |
ttctgctttgatatcctttaactcaaattgccaatggagcattatgccttgcttgttttggaaaaatgtggttggcttggttcatgataatataaaaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50964753 |
ttctgctttgatatcctttaactcaaattgccaatggagcattatgccttgcttgttttggaaaaatgtggttggcttggttcatgataatataaaaaat |
50964852 |
T |
|
| Q |
301 |
ctaatagtaagctaattctagnnnnnnnnnnttctttggtgacaacatatggcttatatatagtgtggttagtaaatcaatgtgtgaaagggaaacatga |
400 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50964853 |
ctaatagtaagctaattcaagaaaaaaaaaattctttggtgacaacgtatggcttatatatagtgtggttagtaaatcaatgtgttaaagggaaacatga |
50964952 |
T |
|
| Q |
401 |
gatgtggaatcatcagctgggtgccaaaatct |
432 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
50964953 |
gatgtggaatcatcaactgggtgccaaaatct |
50964984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 106 - 293
Target Start/End: Original strand, 15856511 - 15856704
Alignment:
| Q |
106 |
caaactcatattgaggtcataatacaatgcattggatgacatttgctcaatatttattcatgcttgcaatttgattactttccttgttttctaaattctg |
205 |
Q |
| |
|
||||||| |||| | |||||| |||||||||||||||| |||||||| | |||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
15856511 |
caaactcctattaatgtcatagtacaatgcattggatggcatttgcttagtatttattcatgtctgcaatttgattactttttttgttttctaaattcta |
15856610 |
T |
|
| Q |
206 |
ctttgatatc-ctttaactcaaattgccaatggag---cattatgccttgcttgttttggaaaa-atgtggttggcttg-gttcatgataatat |
293 |
Q |
| |
|
| ||| || ||||||||||||||| ||||||| |||||||||||| || |||||||||| ||||| ||| |||| |||||||||||||| |
|
|
| T |
15856611 |
tatcgatgtctttttaactcaaattgctaatggagcaacattatgccttgtttattttggaaaagatgtgattgccttgagttcatgataatat |
15856704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 50948986 - 50949088
Alignment:
| Q |
129 |
acaatgcattggatgacatttgctcaatatttattcatgcttgcaatttgattactttccttgttttctaaattctgctttgatat-cctttaactcaaa |
227 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| | ||| |||||| | |||| ||||||||||||||||||||||| | ||| | |||||||||||| |
|
|
| T |
50948986 |
acaatgcattggatgt-attttctcaatatttaataatgtctgcaatctcattattttccttgttttctaaattctgcatcgatgtccctttaactcaat |
50949084 |
T |
|
| Q |
228 |
ttgc |
231 |
Q |
| |
|
|||| |
|
|
| T |
50949085 |
ttgc |
50949088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 432
Target Start/End: Original strand, 50980374 - 50980435
Alignment:
| Q |
371 |
agtaaatcaatgtgtgaaagggaaacatgagatgtggaatcatcagctgggtgccaaaatct |
432 |
Q |
| |
|
||||||||||||| | || || ||||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
50980374 |
agtaaatcaatgtatcaatggaaaacatgagcggtggaatcatcaactggatgccaaaatct |
50980435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 204
Target Start/End: Original strand, 8155557 - 8155635
Alignment:
| Q |
126 |
aatacaatgcattggatgacatttgctcaatatttattcatgcttgcaatttgattactttccttgttttctaaattct |
204 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| ||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
8155557 |
aatacaatgcattggatggtttttgcttaatatttattaatgtctgcaatttcattactttccttgttttctaaattct |
8155635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 13641467 - 13641411
Alignment:
| Q |
376 |
atcaatgtgtgaaagggaaacatgagatgtggaatcatcagctgggtgccaaaatct |
432 |
Q |
| |
|
||||| |||| || |||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
13641467 |
atcaacgtgttaatgggaaacatgagttgtggaatcatcaactgggtgccaaaatct |
13641411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University