View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3499_low_13 (Length: 382)

Name: NF3499_low_13
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3499_low_13
NF3499_low_13
[»] chr3 (1 HSPs)
chr3 (1-300)||(36748637-36748930)
[»] chr2 (2 HSPs)
chr2 (316-363)||(25423859-25423906)
chr2 (318-363)||(42745097-42745142)
[»] chr4 (2 HSPs)
chr4 (314-363)||(9012385-9012434)
chr4 (315-363)||(38766204-38766252)
[»] chr1 (3 HSPs)
chr1 (316-363)||(7242787-7242833)
chr1 (318-363)||(18428123-18428168)
chr1 (318-363)||(49071692-49071737)
[»] chr8 (1 HSPs)
chr8 (318-363)||(4125005-4125050)
[»] chr7 (1 HSPs)
chr7 (314-363)||(37339710-37339759)
[»] chr5 (1 HSPs)
chr5 (318-363)||(10592042-10592087)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 36748930 - 36748637
Alignment:
Q  1 ataccttagtatagtacctttgctgatttattctttcatttcttacaaatttattagtgtaacaacttacttttgtttttctaaaattaatacacacgaa 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36748930 ataccttagtatagtacctttgctgatttattctttcacttcttacaaatttattagtgtaacaacttacttttgtttttctaaaattaatacacacgaa 36748831  T
Q  101 ctttgtgagtaggtctcaaaggaaaaaaggtggtagtattataaccttttaactannnnnnnaatgacaaatattaatgttaatatgttattattatgtt 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||      |||||||||||||||||||||||||    
T  36748830 ctttgtgagtaggtctcaaaggaaaaaaggtagtagtattataaccttttaactatttttttaatgaca------aatgttaatatgttattattatgtt 36748737  T
Q  201 aataccgttttacttatcaagacttaaaccctagacctttaactcttaatctactttaatctcttagatcaaactagttaaactaccaaacaccccaacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  36748736 aataccgttttacttatcaagacttaaaccctagacctttaactcttaaactactttaatctcttatatctaactagttaaactaccaaacaccctaacc 36748637  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 25423906 - 25423859
Alignment:
Q  316 tataaatcggatatcttcctcgcgcaactgctgagactaatccctcga 363  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||||    
T  25423906 tataaatcgggtatcctccacgcgcaactgctgagactaatccctcga 25423859  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 42745097 - 42745142
Alignment:
Q  318 taaatcggatatcttcctcgcgcaactgctgagactaatccctcga 363  Q
    |||| ||| |||| ||| ||||||||||||||||||||||||||||    
T  42745097 taaaccgggtatcctccgcgcgcaactgctgagactaatccctcga 42745142  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 9012434 - 9012385
Alignment:
Q  314 ggtataaatcggatatcttcctcgcgcaactgctgagactaatccctcga 363  Q
    |||||||||||| |||| ||| ||||||||||| ||||||||||||||||    
T  9012434 ggtataaatcgggtatcctccgcgcgcaactgcggagactaatccctcga 9012385  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 38766252 - 38766204
Alignment:
Q  315 gtataaatcggatatcttcctcgcgcaactgctgagactaatccctcga 363  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||||||||||    
T  38766252 gtataaatcgggtatcctccgcgcgcaactgcggagactaatccctcga 38766204  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 7242787 - 7242833
Alignment:
Q  316 tataaatcggatatcttcctcgcgcaactgctgagactaatccctcga 363  Q
    |||||||||| |||||||| ||||||||||| ||||||||||||||||    
T  7242787 tataaatcgg-tatcttccgcgcgcaactgcggagactaatccctcga 7242833  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 18428123 - 18428168
Alignment:
Q  318 taaatcggatatcttcctcgcgcaactgctgagactaatccctcga 363  Q
    |||||||| |||| ||| ||||||||||| ||||||||||||||||    
T  18428123 taaatcgggtatcctccgcgcgcaactgcagagactaatccctcga 18428168  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 49071737 - 49071692
Alignment:
Q  318 taaatcggatatcttcctcgcgcaactgctgagactaatccctcga 363  Q
    ||||||||||||||||| | ||||||||| |||||||||| |||||    
T  49071737 taaatcggatatcttccgcacgcaactgcggagactaatctctcga 49071692  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 4125005 - 4125050
Alignment:
Q  318 taaatcggatatcttcctcgcgcaactgctgagactaatccctcga 363  Q
    |||||||| |||| ||| ||||||||||| ||||||||||||||||    
T  4125005 taaatcgggtatcctccgcgcgcaactgcggagactaatccctcga 4125050  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 37339710 - 37339759
Alignment:
Q  314 ggtataaatcggatatcttcctcgcgcaactgctgagactaatccctcga 363  Q
    |||||||||||| |||| |||  |||||||||| ||||||||||||||||    
T  37339710 ggtataaatcgggtatcctccgtgcgcaactgcggagactaatccctcga 37339759  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 10592087 - 10592042
Alignment:
Q  318 taaatcggatatcttcctcgcgcaactgctgagactaatccctcga 363  Q
    |||||||| |||| ||| ||||||||||| ||||||||||||||||    
T  10592087 taaatcgggtatcctccgcgcgcaactgcagagactaatccctcga 10592042  T

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