View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3499_low_14 (Length: 380)
Name: NF3499_low_14
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3499_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 40733802 - 40733615
Alignment:
| Q |
39 |
gatgcggacttctttgaactgtttgaaagttggtgcgagaaatatagcaaaacatactcagaggaagagaaaagctacagcttcaaagtattcaaggaca |
138 |
Q |
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| T |
40733802 |
gatgcgaacttctttgaactgtttgaaagttggtgtgagaaatatggcaaaacatactcagaggaagagaaacgctacagcttcaaagtattcaaggaca |
40733703 |
T |
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| Q |
139 |
actatccagttaaggcgccagacaaaagtta-ctttgtctggctttcctcaatgaatatggtgctattgatcaccccaatggttcctc |
225 |
Q |
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| T |
40733702 |
actatccagttaaggcgccagacaaaagttacctttgtctggctttcctcaatgaatatggtgctattgatcaccccaatggctcctc |
40733615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 229 - 380
Target Start/End: Complemental strand, 40733509 - 40733353
Alignment:
| Q |
229 |
taagacctatcattttcatcctttttcgttctctatttcttcttcatcttggtttgctttcct-----atcttattattacaatggctatatgttagact |
323 |
Q |
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| T |
40733509 |
taagacctatcattttcatccttttttgttctctatttcttcttcatcttggtttgctttcctttcctatcttattattacaatggctatatgttagact |
40733410 |
T |
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| Q |
324 |
tatgcagtaaatatgctacatgtgggataaagtcatcatcattagaattattttgtt |
380 |
Q |
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| T |
40733409 |
tatgcagtaaatatgctacatgtgcgataaagtcatcatcattagaattattttgtt |
40733353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 37472083 - 37472205
Alignment:
| Q |
26 |
tttctaggtctctgatgcggacttctttgaactgtttgaaagttggtgcgagaaatatagcaaaacatactc---agaggaagagaaaagctacagcttc |
122 |
Q |
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| T |
37472083 |
tttcaaggtttctgatgcggacttttatgaacactttgaagcttggtgcaagaaatatgtcaaaacatactcctaagaggaacataaacgctacaggttc |
37472182 |
T |
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| Q |
123 |
aaagtattcaaggacaactatcc |
145 |
Q |
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| T |
37472183 |
aaactgttcaaggacaactatcc |
37472205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 333
Target Start/End: Original strand, 37472442 - 37472511
Alignment:
| Q |
263 |
atttcttcttcatcttggtttgctttcctatcttattattacaatggctatatgttagacttatgcagtaa |
333 |
Q |
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| T |
37472442 |
atttctttttcatatcggtttgctttcatatctt-ttgttacagtggctatatgttagatttatgcggtaa |
37472511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 33003926 - 33003811
Alignment:
| Q |
33 |
gtctctgatgcggacttctttgaactgtttgaaagttggtgcgagaaatatagcaaaacatac---tcagaggaagagaaaagctacagcttcaaagtat |
129 |
Q |
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| T |
33003926 |
gtctctgatgccgacttttatgaacacttcgaaacttggtgcaagaaatatggaaaaacatactcttcagaggaacataaacgctataggttcaaactgt |
33003827 |
T |
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| Q |
130 |
tcaaggacaactatcc |
145 |
Q |
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||||||| |||||||| |
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| T |
33003826 |
tcaaggagaactatcc |
33003811 |
T |
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