View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3499_low_19 (Length: 259)
Name: NF3499_low_19
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3499_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 18724218 - 18724451
Alignment:
| Q |
18 |
aagtgtcggtgttgtaagccagtgctgcttgtatccgaatctcatcaaattaagttcacagtttttggctaatttggctctcaagatcaatgctaaagtt |
117 |
Q |
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| T |
18724218 |
aagtgtcggtgttgtaagccagtgctgcttgtatccgaatctcatcaaattaagttcacagtttttggctaatttggctctcaagatcaatgctaaagtt |
18724317 |
T |
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| Q |
118 |
ggtggatgcactgttgctttgtacaactcgcttccttctcaattaccgcgtcttttcaacatcgacgagccggtgatgttcatgggagccgacgtcacgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18724318 |
ggtggatgcactgttgctttgtacaactcgcttccttctcaattaccgcgtcttttcaacatcgacgagccggtgatgttcatgggagccgacgtcacgc |
18724417 |
T |
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| Q |
218 |
atcctcatccgctcgacgattcaagtccatctgt |
251 |
Q |
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| T |
18724418 |
atcctcatccgctcgacgattcaagtccatctgt |
18724451 |
T |
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