View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3499_low_2 (Length: 657)
Name: NF3499_low_2
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3499_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 20)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 559
Target Start/End: Complemental strand, 30385094 - 30384533
Alignment:
| Q |
18 |
atccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30385094 |
atccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccaaaaaatctttcaggattgaacattttagcatcatcaccccatagttc |
30384995 |
T |
|
| Q |
118 |
gcagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaagg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30384994 |
gcagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaagg |
30384895 |
T |
|
| Q |
218 |
ccaattacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaagattaatgttacatgttaaggccaagcaacaaaatagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30384894 |
ccaattacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaagattaatgttacatgttaaggccaagcaacaaaaaagt |
30384795 |
T |
|
| Q |
318 |
ctcgataaacaacaaaaccagtttgtcttgaggcttatactgaatacaagattagtgttagtatttccggacaaaagatgcaactgttgattaaaattct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30384794 |
ctcgataaacaacaaaaccagtttgtcttgaggcttatagtgaatacaagattagtgttagaatttccggacaaaagatgcaactcttgattaaaattct |
30384695 |
T |
|
| Q |
418 |
acgaaaatgcaactc--------------------atacaacaatacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaag |
497 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30384694 |
acgaaaatgaaactcatatcatgagtgtgaagataataaaacaatacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaag |
30384595 |
T |
|
| Q |
498 |
acatgtaacacttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcat |
559 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30384594 |
acatgtaacacttcctcccttgcacgggtttgccaatcagggtacctactcaataatatcat |
30384533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 30395846 - 30395573
Alignment:
| Q |
18 |
atccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttc |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30395846 |
atccaaatggaaaaaatgaaactctaccatttgttgctttagaaattcctccggaaaatctctcaggattgaacattttagcatcatcgccccatagttt |
30395747 |
T |
|
| Q |
118 |
gcagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaagg |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
30395746 |
gcagtcatgatgaatcaaaagaattggtaagaaaacctccactccagcaggtaatgtcaggtttccaagtttcatatctttcacaacatttctagcaagt |
30395647 |
T |
|
| Q |
218 |
ccaattacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaagattaatgttac |
291 |
Q |
| |
|
|| ||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
30395646 |
cccattactggagggtataatctaagaacctcatacaaaatcatggtgacctgttacaaaaagatttatgttac |
30395573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 30476618 - 30476368
Alignment:
| Q |
19 |
tccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcg |
118 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
30476618 |
tccaaatggaaaaaatgaaaatctcccatttgttgctttggaaattcctccagaaaatctctcaggattgaacaccttagcatcttcaccccatagttcg |
30476519 |
T |
|
| Q |
119 |
cagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaaggc |
218 |
Q |
| |
|
|||||||||||| ||||| || |||||| ||| | |||||| || |||| |||||| ||||||||||| |||||||| | | | |||||| ||| | |
|
|
| T |
30476518 |
gagtcatggtgaaccaaaactatcggtaaggtaatttgcactccggctggtaatgttaggtttccaagtttgacatctttgtgagtacttcgag-aagtc |
30476420 |
T |
|
| Q |
219 |
-caattacgggagggtataacctaagaacctcatacaaaatcatggtgacct |
269 |
Q |
| |
|
| ||| |||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30476419 |
gcgattgcgggtgggtataatctaagaacctcatacaaaatcatggtgacct |
30476368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 30437666 - 30437406
Alignment:
| Q |
19 |
tccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcg |
118 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| ||| ||| |||||||||| ||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
30437666 |
tccaaatggaacaaatgaatttcttccatttgttgctttcaaaacaccttcagaaaatctctcaggattgaacaccttagcatcgtcaccccatagttcg |
30437567 |
T |
|
| Q |
119 |
cagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaaggc |
218 |
Q |
| |
|
|||||||||||| |||| || |||||| ||| | |||||| ||||||| |||||| |||||||||||||||||||| | |||| |||||||||| |
|
|
| T |
30437566 |
gagtcatggtgaactaaaactatcggtaaggtaatttgcactccggcaggtaatgttaggtttccaagtttcacatctttgtgaacacttcgagcaagtt |
30437467 |
T |
|
| Q |
219 |
caattacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaa |
279 |
Q |
| |
|
| ||||| || |||||||||||||||||||| ||||||||||| ||||||| || |||||| |
|
|
| T |
30437466 |
cgattactggtgggtataacctaagaacctcgtacaaaatcatcgtgacctgtctcaaaaa |
30437406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 23783369 - 23783613
Alignment:
| Q |
19 |
tccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcg |
118 |
Q |
| |
|
|||||| |||||| |||||| ||| || |||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
23783369 |
tccaaacggaaaatatgaaaatctaccgtttgttgctttggaaattccaccagaaaatctctcaggattgaaaatcttagcatcatcaccccatagttca |
23783468 |
T |
|
| Q |
119 |
cagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaaggc |
218 |
Q |
| |
|
|| |||||||||||||||| |||||| | | ||| ||||| ||||||| || ||| | | ||||||||| | ||| |||||||| |||||||||| || |
|
|
| T |
23783469 |
caatcatggtgaatcaaaacaattggcatgtaaacctccattccagcatataatgtcaagtctccaagttttatatcattctcaacttttcgagcaacgc |
23783568 |
T |
|
| Q |
219 |
caattacgggagggtataacctaagaacctcatacaaaatcatgg |
263 |
Q |
| |
|
| |||| |||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
23783569 |
cggttacaggagggtacaacctcaaaacctcatacaaaatcatgg |
23783613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 442 - 559
Target Start/End: Complemental strand, 30395084 - 30394967
Alignment:
| Q |
442 |
tacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcagggta |
541 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30395084 |
tacttacaatctttaggttatttagcccatcaaaatctggttttttgttgccaaagacatgtaacacttcctccctagcacgtgtttgccaatcagggta |
30394985 |
T |
|
| Q |
542 |
cctactcaataatatcat |
559 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
30394984 |
cctactcaacaatatcat |
30394967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 23768713 - 23768470
Alignment:
| Q |
19 |
tccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcg |
118 |
Q |
| |
|
|||||| |||||| |||||| ||| || |||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
23768713 |
tccaaacggaaaatatgaaaatctaccgtttgttgctttggaaattccaccagaaaatctctcaggattgaaaatcttagcatcatcaccccatagttca |
23768614 |
T |
|
| Q |
119 |
cagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaaggc |
218 |
Q |
| |
|
|| |||||||||||||||| ||| || ||| ||| |||| ||||||| || ||| | | ||||||||| | ||| |||||||| ||||||| || || |
|
|
| T |
23768613 |
caatcatggtgaatcaaaacaatcggcaagtaaacatccattccagcatataatgtcaagtctccaagttttatatcattctcaacttttcgagaaacgc |
23768514 |
T |
|
| Q |
219 |
caattacgggagggtataacctaagaacctcatacaaaatcatg |
262 |
Q |
| |
|
| ||| |||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
23768513 |
cggttataggagggtacaacctcaaaacctcatacaaaatcatg |
23768470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 30425378 - 30425128
Alignment:
| Q |
19 |
tccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcg |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||| ||| | |||||||| || |||||||||| ||||||||||||||||||||||| |
|
|
| T |
30425378 |
tccaaatggaaaaaatgaatttcttccatttgttgcttttaaaacaccttctgaaaatctctcgggattgaacaccttagcatcatcaccccatagttct |
30425279 |
T |
|
| Q |
119 |
cagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaaggc |
218 |
Q |
| |
|
||||||||||| ||||| || | |||||||| || |||||| || || | || ||| ||||||||| |||||||||| | |||| |||||||||| |
|
|
| T |
30425278 |
atgtcatggtgaaccaaaattatcgataagaaaacctgcactccggctggcaatgctaggtttccaagtatcacatctttgtgaacacttcgagcaagcg |
30425179 |
T |
|
| Q |
219 |
caattacgggagggtataacctaagaacctcatacaaaatcatggtgacct |
269 |
Q |
| |
|
| ||| | || |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
30425178 |
cgattgctggtgggtataacctaagaacctcgtacaaaatcatagtgacct |
30425128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 30469475 - 30469217
Alignment:
| Q |
21 |
caaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgca |
120 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||| ||| ||| |||||||||| || |||||||||| |||||||| |||||||||||||| |
|
|
| T |
30469475 |
caaatggaaaaaatgaatttcttccattggttgcttttaaaacaccttcagaaaatctctcgggattgaacaccttagcatcttcaccccatagttctat |
30469376 |
T |
|
| Q |
121 |
gtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaaggcca |
220 |
Q |
| |
|
||||||||||| || || || | |||||||| || |||||| || || | || ||| ||||||||||| |||||||| | ||| |||||||||| | |
|
|
| T |
30469375 |
gtcatggtgaaccataattatcgataagaaaacctgcactccggctggcaatgctaggtttccaagtttaacatctttgtgaactcttcgagcaagtgcg |
30469276 |
T |
|
| Q |
221 |
attacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaa |
279 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
30469275 |
attactggtgggtataacctaagaacctcatacaaaatcatggtgacctgtctcaaaaa |
30469217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 30431409 - 30431161
Alignment:
| Q |
21 |
caaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgca |
120 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||| ||| ||| | |||||||| || |||||||||| |||||||| |||||||||||||| |
|
|
| T |
30431409 |
caaatggaataaatgaatttcttccatttgttgcttttaaaacaccttctgaaaatctctcgggattgaacaccttagcatcttcaccccatagttctat |
30431310 |
T |
|
| Q |
121 |
gtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaaggcca |
220 |
Q |
| |
|
||||||||||| ||||| || | |||||||| || |||||| ||||||| |||||| ||||||||| ||| |||||| | | || |||||| ||| | |
|
|
| T |
30431309 |
gtcatggtgaaccaaaattatcgataagaaaacctgcactcctgcaggtaatgttaggtttccaagtgtcatatctttgtgatcacttcgagtaagcgcg |
30431210 |
T |
|
| Q |
221 |
attacgggagggtataacctaagaacctcatacaaaatcatggtgacct |
269 |
Q |
| |
|
||| | || |||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
30431209 |
atttctggtgggtataacctaagaacctcgtacaaaatcatagtgacct |
30431161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 8379013 - 8379277
Alignment:
| Q |
19 |
tccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcg |
118 |
Q |
| |
|
||||||||||||| || || ||| |||||||||||||||||||||||| ||| |||||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
8379013 |
tccaaatggaaaatatataaatctaccatttgttgctttggaaattccttcagcaaatctctcaggattgaacatctttgcatcatcaccccatagttca |
8379112 |
T |
|
| Q |
119 |
cagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaaggc |
218 |
Q |
| |
|
|| ||| |||| ||||| |||||||||||||| |||||||||||||||| | | ||||||| || | ||||| |||||| ||||| || | |
|
|
| T |
8379113 |
ttgttatgttgaagcaaaataattggtaagaaaacttccactccagcaggtacttccatgtttccaaactttatgtctttgccaacatatcgagtaacac |
8379212 |
T |
|
| Q |
219 |
caattacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaagatt |
283 |
Q |
| |
|
||| | | || || || ||||| |||||||||||||||||||| | || || ||||||||||||| |
|
|
| T |
8379213 |
caaatgctggtggatacaaccttagaacctcatacaaaatcatagggagctgtcacaaaaagatt |
8379277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 30484796 - 30484532
Alignment:
| Q |
19 |
tccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcg |
118 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| |||| |||| | | |||||| ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
30484796 |
tccaaatggaaaaaatgaatttctaccatttgttgcttttgaaactccttctgcaaatctctcaggattgaacaccttagcatcttcaccccatagttca |
30484697 |
T |
|
| Q |
119 |
cagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaaggc |
218 |
Q |
| |
|
|| ||||||||| ||| ||||||||| ||||| ||||| ||||||| |||||| ||||||| ||| || ||||| | || ||||| ||| |
|
|
| T |
30484696 |
tggttgtggtgaatccaaactattggtaaggtaatctggactccggcaggtaatgttaggtttccaacttttacgtctttgtgaatggctcgaggaagca |
30484597 |
T |
|
| Q |
219 |
caattacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaagatt |
283 |
Q |
| |
|
| ||| || ||||||||||| ||||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
30484596 |
cggttattggtgggtataaccttagaacctcatacaaaatcatggtcatctgtcacaaaaagatt |
30484532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 438 - 550
Target Start/End: Complemental strand, 30437349 - 30437237
Alignment:
| Q |
438 |
acaatacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcag |
537 |
Q |
| |
|
||||||||||| ||||| || | | |||||||||||||||| ||||| |||||||||| || ||||| ||||||||||| ||||||| ||||||||||| |
|
|
| T |
30437349 |
acaatacttacaatcttaagatgacttagcccatcaaaatcgggtttattgttgccaaatacttgtaatacttcctcccttgcacgtgcttgccaatcag |
30437250 |
T |
|
| Q |
538 |
ggtacctactcaa |
550 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30437249 |
ggtacctactcaa |
30437237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 440 - 559
Target Start/End: Original strand, 8379527 - 8379646
Alignment:
| Q |
440 |
aatacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcaggg |
539 |
Q |
| |
|
||||||||| ||||| || |||||||| || ||| | ||||||||| |||||||||| | ||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
8379527 |
aatacttacaatcttaagtttatttagtccttcatagtctggttttttgttgccaaatatttgtaatacttcctccctagcacgttcttgccaatcaggg |
8379626 |
T |
|
| Q |
540 |
tacctactcaataatatcat |
559 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
8379627 |
tacctactcaacaatatcat |
8379646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 438 - 553
Target Start/End: Complemental strand, 30469160 - 30469045
Alignment:
| Q |
438 |
acaatacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcag |
537 |
Q |
| |
|
||||||||||| ||||| || | | ||||||| |||||||| ||||| ||||||||||||| ||||| ||||| ||||| ||||| | ||||||||| | |
|
|
| T |
30469160 |
acaatacttacaatcttaagatgacttagcccgtcaaaatcaggtttattgttgccaaagacctgtaatacttcttcccttgcacgcgcttgccaatcgg |
30469061 |
T |
|
| Q |
538 |
ggtacctactcaataa |
553 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30469060 |
ggtacctactcaataa |
30469045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 439 - 559
Target Start/End: Complemental strand, 30476121 - 30476001
Alignment:
| Q |
439 |
caatacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcagg |
538 |
Q |
| |
|
|||||||||| ||||| || | ||||| |||||||||||||||||| | ||||| ||||| || || ||||||||||| ||||| | |||||||||||| |
|
|
| T |
30476121 |
caatacttacaatcttaagttggtttagtccatcaaaatctggttttttattgccgaagacttgcaatacttcctcccttgcacgagcttgccaatcagg |
30476022 |
T |
|
| Q |
539 |
gtacctactcaataatatcat |
559 |
Q |
| |
|
||||||||||| || ||||| |
|
|
| T |
30476021 |
atacctactcaacaacatcat |
30476001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 440 - 550
Target Start/End: Complemental strand, 30425059 - 30424949
Alignment:
| Q |
440 |
aatacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcaggg |
539 |
Q |
| |
|
||||||||||||||| || | | ||||||| ||||| || ||||| |||||||||| || ||||| ||||| ||||| |||||| ||||||||||||| |
|
|
| T |
30425059 |
aatacttacgatcttaagatgacttagcccgtcaaagtcaggtttattgttgccaaaaacttgtaatacttcttcccttgcacgttcttgccaatcaggg |
30424960 |
T |
|
| Q |
540 |
tacctactcaa |
550 |
Q |
| |
|
||||||||||| |
|
|
| T |
30424959 |
tacctactcaa |
30424949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 441 - 555
Target Start/End: Complemental strand, 30484080 - 30483966
Alignment:
| Q |
441 |
atacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcagggt |
540 |
Q |
| |
|
|||||||| ||||| || | ||||| || ||||||||||||| | |||||||||| || |||| ||||||||| || ||||||| |||||||| ||||| |
|
|
| T |
30484080 |
atacttacaatcttaagatggtttagtccttcaaaatctggttgtttgttgccaaaaacttgtagcacttcctctcttgcacgtgcttgccaattagggt |
30483981 |
T |
|
| Q |
541 |
acctactcaataata |
555 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30483980 |
gcctactcaataata |
30483966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 440 - 550
Target Start/End: Complemental strand, 30431092 - 30430982
Alignment:
| Q |
440 |
aatacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcaggg |
539 |
Q |
| |
|
||||||||||||||| || | | ||||||| ||||| |||||||| |||||||||| || ||||| ||||| ||||| |||||| ||||||||| || |
|
|
| T |
30431092 |
aatacttacgatcttaagatgacttagcccgtcaaattctggtttattgttgccaaatacttgtaatacttcttcccttgcacgttcttgccaatctggt |
30430993 |
T |
|
| Q |
540 |
tacctactcaa |
550 |
Q |
| |
|
||||||||||| |
|
|
| T |
30430992 |
tacctactcaa |
30430982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 550
Target Start/End: Original strand, 23783711 - 23783821
Alignment:
| Q |
440 |
aatacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcaggg |
539 |
Q |
| |
|
||||||||| ||||| || |||||||| |||||||| || |||||| |||||||| | | ||| ||||||| ||| |||||| ||||||||||||| |
|
|
| T |
23783711 |
aatacttacaatcttaagtttatttagtccatcaaagtcgggtttttcattgccaaatatctctaatacttccttccttgcacgttcttgccaatcaggg |
23783810 |
T |
|
| Q |
540 |
tacctactcaa |
550 |
Q |
| |
|
||||||||||| |
|
|
| T |
23783811 |
tacctactcaa |
23783821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 41626861 - 41627122
Alignment:
| Q |
18 |
atccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttc |
117 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41626861 |
atccaaatggaaaaaatgaaactctaccgttcgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccataattc |
41626960 |
T |
|
| Q |
118 |
gcagtcatggtgaatcaaaagaattggtaagaaaatctccactccagcaggtagtgttagatttccaagtttcacatctttctcaacatttcgagcaagg |
217 |
Q |
| |
|
|| |||||||| | ||| | |||||| | ||||| |||||||||||||| || |||||| |||||||||||||||| ||| ||||| ||||| | ||| |
|
|
| T |
41626961 |
acaatcatggtgcaacaatataattggcatgaaaacctccactccagcagataatgttaggtttccaagtttcacatttttttcaacgtttcgcgaaagc |
41627060 |
T |
|
| Q |
218 |
ccaattacgggagggtataacctaagaacctcatacaaaatcatggtgacctatcacaaaaa |
279 |
Q |
| |
|
|||||| |||||| ||||| || | ||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
41627061 |
tcaattatgggaggatataatctcataacctcatacaaaatcatggtaacctatgacaaaaa |
41627122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 441 - 555
Target Start/End: Original strand, 41627756 - 41627870
Alignment:
| Q |
441 |
atacttacgatctttaggttatttagcccatcaaaatctggttttctgttgccaaagacatgtaacacttcctccctcgcacgtgtttgccaatcagggt |
540 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||| |||||| |||||||||||| ||||| ||||||||||| || | || |||||| ||||||| |
|
|
| T |
41627756 |
atacttacaatcttcaagttatttagcccatcaaaattaggttttttgttgccaaagatttgtaatacttcctcccttgcccttgcttgccactcagggt |
41627855 |
T |
|
| Q |
541 |
acctactcaataata |
555 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41627856 |
acctactcaataata |
41627870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 551 - 641
Target Start/End: Original strand, 32702045 - 32702135
Alignment:
| Q |
551 |
taatatcatcgatgtcatcaaaacttaatatcatccaagtattttctgtgtttgaactgtctgtggcaaatggtggagaaaactttactgg |
641 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32702045 |
taatatcatcgatgtcatcgaaacttaataccatccaagtattttctgtgtttgaactgtctgtggcaaatggtggagaaaactttactgg |
32702135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 271
Target Start/End: Original strand, 15844625 - 15844676
Alignment:
| Q |
220 |
aattacgggagggtataacctaagaacctcatacaaaatcatggtgacctat |
271 |
Q |
| |
|
|||||| |||||||||||||| || ||||| |||||||||||||| |||||| |
|
|
| T |
15844625 |
aattacaggagggtataaccttagtacctcgtacaaaatcatggtaacctat |
15844676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 15851701 - 15851754
Alignment:
| Q |
61 |
aattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatag |
114 |
Q |
| |
|
||||||| ||||||| | ||||||||||||| | || ||||||||||||||||| |
|
|
| T |
15851701 |
aattccttcagaaaaccgttcaggattgaacttctttgcatcatcaccccatag |
15851754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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