View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3499_low_4 (Length: 558)
Name: NF3499_low_4
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3499_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 34429267 - 34429529
Alignment:
| Q |
16 |
gattcttctccaaatcaatttcattctccaaaattcgtaaacccttactcaacctagaaacatccgaagccgaaccggttgttgattctgcaaaaactgt |
115 |
Q |
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| T |
34429267 |
gattcttctccaaatcaatttcattctccaaaattcgtaaacccttactcaacctagaaacatccgaagccgaaccggttgttgattctgcaaaaactgt |
34429366 |
T |
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| Q |
116 |
agcgaaatctgtgaagaaacatccgaatttgataggtgctagtgtggtaacgccgatagtgaaggcactaaaaggcgctggagaaggaaattttgtgaaa |
215 |
Q |
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| T |
34429367 |
agcgaaatctgtgaagaaacatccgaatttgataggtgctagtgtggtaacgccgatagtgaaggcactaaaaggcgctggagaaggaaattttgtgaaa |
34429466 |
T |
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| Q |
216 |
ttgaatctcaatggtaagaggaaaaagtttttgaataaaggatggaagaaaaatggaaaattt |
278 |
Q |
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| T |
34429467 |
ttgaatctcaatggtaagaggaaaaagtttttgaataaaggatggaagaaaaatggaaaattt |
34429529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 344 - 545
Target Start/End: Original strand, 34429595 - 34429793
Alignment:
| Q |
344 |
acgtataaaatcggaatacaaagaaggcgacgatgatgatgatgaggaggatggtatgggtgttgagaatgcaaagcaacaggaaaagaagaatggttgg |
443 |
Q |
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| T |
34429595 |
acgtataaaatcggaatacaaagaag---acgatgatgatgatgagggggatggtatgggtgttgagaatgcaaagcaacaggaaaagaagaatggttgg |
34429691 |
T |
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| Q |
444 |
gaaaatgaatgcaaagtgttggaggaggctgtgttagcagcaagagatgatgcttctgatgagaatttggtgaagttgttgaaattgattcatggttttg |
543 |
Q |
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| T |
34429692 |
gaaaatgaatgcgaagtgttggaggaggctgtgttagcagcaagagatgatgcttctgatgagaatttggtgaagttgttgaaattgattcatggttttg |
34429791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 33738406 - 33738156
Alignment:
| Q |
18 |
ttcttctccaaatcaatttcattctccaaaattcgtaaacccttactcaacctagaaacatccgaagccgaaccggttgttgattctgcaaaaactgtag |
117 |
Q |
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| T |
33738406 |
ttcttctccaaatcaattttcttcaccaaaattcttaaatccttactcaatctagaatattctgaggctgaacttgttgttgattcctctaaaactatca |
33738307 |
T |
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| Q |
118 |
cgaaatctgtgaagaaa-catccgaatttgataggtgctagtgtggtaacgccgatagtgaaggcactaaaaggcgctggagaaggaaattttgtgaaat |
216 |
Q |
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| T |
33738306 |
tcaaatctggggaaaaagcatcctaatttgataggtactagtgtggtaatgccaatagt----------aaagactcctgagaagaaaattt-gttaaat |
33738218 |
T |
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| Q |
217 |
tgaatctcaatggtaagaggaaaaagtttttgaataaaggatggaagaaaaatggaaaattt |
278 |
Q |
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| T |
33738217 |
tggatctcaatgggaatataaaaaagtttttgaataaaggatggaaggaaaatgaaaaattt |
33738156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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