View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3499_low_5 (Length: 545)
Name: NF3499_low_5
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3499_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Original strand, 36748907 - 36749405
Alignment:
| Q |
13 |
agcaaaggtactatactaaggtattaggtaatccatccattcatttctaattgtcatatttgtataaaacaaaaat-------aagtagtatatacttta |
105 |
Q |
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| T |
36748907 |
agcaaaggtactatactaaggtattaggtaatccatccattcatttctaattgtcatatttgtataaaataatattgcatatgaagtagtatatacttta |
36749006 |
T |
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| Q |
106 |
aattggagaatgccaccaaatgttattagtgcatgcattgtttaataaactaaaatatgtaagtttgcaaagggnnnnnnnngtgtgttgtatcgacgaa |
205 |
Q |
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| T |
36749007 |
aattggagaatgccaccaaatgttattagtgcatgcattgtttaataaactaaaatatgtaagtttgcaaagggaaaaaaaagtgtgttgtatcgacgaa |
36749106 |
T |
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| Q |
206 |
tgtttgacttttgaacattatattagtatattttgtaaaccaaagtattctgtgcgtaaatgagaataatctcaaggtcactaatatttaacttttaaga |
305 |
Q |
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| T |
36749107 |
tgtttgacttttgaacattatattagtatattttgtaaactaaagtattatgtgtgtaaatgagaataatctcaaggtcactaatatttaacttttaaga |
36749206 |
T |
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| Q |
306 |
ggttgatacttgatatcattcaacatatatttttctatacatattaatcatagatcaaactttgaactaaaataattaagagatatatatgcatcattta |
405 |
Q |
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| T |
36749207 |
ggttgatacttgatatcattcaacatatatttttctatacatattaatcatagatcaaactttgaactaaaataattaagagatatatatgcatcattta |
36749306 |
T |
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| Q |
406 |
tctacaccgtatcgaatccttatatccgtgaaagttaagcacatgggtatgaactctctttgaacatggtgtgaaactaacgaggatgtgactaattaa |
504 |
Q |
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| T |
36749307 |
tctacaccgtaccgaatccttatatccgtgaaagttaagcacatgcgtatgaactctctttgaacatggtgtgaaactaacaaggatgtgactaattaa |
36749405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 529
Target Start/End: Original strand, 36749599 - 36749631
Alignment:
| Q |
497 |
ctaattaatggggtagtactctgccaaacaatt |
529 |
Q |
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| T |
36749599 |
ctaattaatggggtagtactctgccagacaatt |
36749631 |
T |
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