View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3499_low_6 (Length: 541)

Name: NF3499_low_6
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3499_low_6
NF3499_low_6
[»] chr5 (10 HSPs)
chr5 (183-525)||(4306331-4306674)
chr5 (12-192)||(4307271-4307451)
chr5 (13-121)||(4301606-4301714)
chr5 (13-147)||(4296090-4296226)
chr5 (16-131)||(4311890-4312006)
chr5 (219-296)||(35138982-35139059)
chr5 (219-266)||(32693769-32693816)
chr5 (233-287)||(6095304-6095358)
chr5 (221-257)||(10273301-10273337)
chr5 (240-284)||(35439177-35439221)
[»] chr7 (12 HSPs)
chr7 (219-296)||(22310418-22310495)
chr7 (219-293)||(40561717-40561791)
chr7 (221-266)||(33853445-33853490)
chr7 (174-266)||(40491657-40491750)
chr7 (221-268)||(29829330-29829377)
chr7 (221-266)||(12306802-12306847)
chr7 (221-266)||(25156279-25156324)
chr7 (221-266)||(26975317-26975362)
chr7 (237-282)||(27365575-27365620)
chr7 (219-296)||(38123625-38123702)
chr7 (221-266)||(45557444-45557489)
chr7 (225-265)||(7979830-7979870)
[»] chr4 (18 HSPs)
chr4 (181-292)||(55927690-55927802)
chr4 (221-296)||(41751233-41751308)
chr4 (219-290)||(55244647-55244718)
chr4 (221-296)||(22683913-22683988)
chr4 (221-292)||(36639848-36639919)
chr4 (221-282)||(17898089-17898150)
chr4 (219-296)||(47144263-47144340)
chr4 (222-286)||(22250285-22250349)
chr4 (221-285)||(33843771-33843835)
chr4 (171-266)||(43868215-43868311)
chr4 (221-268)||(7223102-7223149)
chr4 (225-288)||(43628175-43628238)
chr4 (232-266)||(8604594-8604628)
chr4 (166-212)||(24364097-24364143)
chr4 (174-295)||(29904282-29904404)
chr4 (235-295)||(10185244-10185305)
chr4 (348-413)||(39438686-39438751)
chr4 (221-262)||(54487253-54487294)
[»] chr3 (18 HSPs)
chr3 (221-292)||(35264372-35264443)
chr3 (174-282)||(30958099-30958209)
chr3 (174-282)||(30973911-30974021)
chr3 (219-296)||(37334993-37335070)
chr3 (221-266)||(41591314-41591359)
chr3 (219-299)||(36302228-36302311)
chr3 (237-295)||(38332531-38332589)
chr3 (219-296)||(3776571-3776648)
chr3 (181-257)||(48089610-48089687)
chr3 (219-266)||(41596108-41596155)
chr3 (225-299)||(7298282-7298356)
chr3 (232-266)||(49526713-49526747)
chr3 (228-296)||(33791973-33792042)
chr3 (226-299)||(40339272-40339345)
chr3 (231-292)||(43661892-43661953)
chr3 (232-297)||(43965682-43965747)
chr3 (232-296)||(27266766-27266830)
chr3 (220-260)||(47278792-47278832)
[»] chr8 (15 HSPs)
chr8 (221-296)||(32767436-32767513)
chr8 (221-286)||(16972025-16972090)
chr8 (174-296)||(32927941-32928064)
chr8 (223-285)||(2764432-2764494)
chr8 (232-266)||(43492209-43492243)
chr8 (219-296)||(4950532-4950609)
chr8 (221-286)||(36447709-36447774)
chr8 (231-295)||(3206107-3206171)
chr8 (219-295)||(4554556-4554632)
chr8 (174-266)||(32994153-32994248)
chr8 (240-296)||(42458311-42458367)
chr8 (237-296)||(35495309-35495368)
chr8 (224-266)||(35495069-35495111)
chr8 (221-273)||(10368037-10368089)
chr8 (232-296)||(32736511-32736575)
[»] chr6 (13 HSPs)
chr6 (203-296)||(882735-882829)
chr6 (219-288)||(32888916-32888985)
chr6 (219-296)||(34620935-34621012)
chr6 (219-296)||(34748372-34748449)
chr6 (231-267)||(957594-957630)
chr6 (232-296)||(7486479-7486543)
chr6 (221-267)||(3798978-3799024)
chr6 (232-296)||(30926751-30926814)
chr6 (221-266)||(25208705-25208750)
chr6 (349-418)||(29240575-29240644)
chr6 (232-293)||(31305819-31305880)
chr6 (224-284)||(8120840-8120900)
chr6 (239-296)||(34026596-34026655)
[»] chr2 (14 HSPs)
chr2 (221-295)||(15220822-15220896)
chr2 (219-296)||(1976823-1976900)
chr2 (221-266)||(3853932-3853977)
chr2 (232-286)||(16518837-16518891)
chr2 (173-285)||(43717384-43717498)
chr2 (232-289)||(4908846-4908903)
chr2 (219-260)||(14532777-14532818)
chr2 (221-292)||(44439307-44439378)
chr2 (171-213)||(38129423-38129465)
chr2 (167-296)||(680197-680326)
chr2 (221-254)||(12110918-12110951)
chr2 (219-296)||(32307133-32307210)
chr2 (343-423)||(7629750-7629830)
chr2 (239-283)||(40401622-40401666)
[»] scaffold0361 (1 HSPs)
scaffold0361 (219-296)||(14073-14150)
[»] chr1 (25 HSPs)
chr1 (221-288)||(44786879-44786946)
chr1 (239-296)||(1514392-1514449)
chr1 (219-284)||(48548973-48549038)
chr1 (237-298)||(4458433-4458494)
chr1 (225-266)||(18325073-18325114)
chr1 (239-296)||(52263626-52263683)
chr1 (232-296)||(1233354-1233418)
chr1 (222-286)||(28464957-28465021)
chr1 (232-296)||(50845207-50845271)
chr1 (225-295)||(3016212-3016280)
chr1 (223-266)||(12119389-12119432)
chr1 (233-296)||(27500334-27500397)
chr1 (199-266)||(27849219-27849286)
chr1 (171-299)||(45557353-45557476)
chr1 (225-279)||(213246-213300)
chr1 (232-266)||(34915145-34915179)
chr1 (236-289)||(27962092-27962145)
chr1 (221-254)||(29759710-29759743)
chr1 (225-266)||(32369996-32370037)
chr1 (221-266)||(35961447-35961492)
chr1 (240-296)||(6568631-6568687)
chr1 (222-262)||(33693085-33693125)
chr1 (223-267)||(34259148-34259192)
chr1 (219-259)||(47981827-47981867)
chr1 (237-265)||(48635169-48635197)
[»] scaffold0172 (1 HSPs)
scaffold0172 (221-254)||(15290-15323)


Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 183 - 525
Target Start/End: Complemental strand, 4306674 - 4306331
Alignment:
Q  183 tgaatgaactgattccgtaaaattgattctagtttgattgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataa 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4306674 tgaatgaactgattccgtaaaattgattctagtttgattgagttgaatgtaaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataa 4306575  T
Q  283 atttaagtgtaaaatcagaagcaatgattttcaactttaagtaaaatcaattcaactcatgaacaaaacatgtcagaatcaatttcacacctctaaaatc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4306574 atttaagtgtaaaatcagaagcaatgattttcaactttaagtaaaatcaattcaactcatgaacaaaacatgtcaaaatcaatttcacacctctaaaatc 4306475  T
Q  383 aaccttgaattcttcaaaagtggaaccaaacttacattaaactttatttattattgacttgatatttgagtttttccc-nnnnnnnnntgaagtcttttg 481  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||          ||||||||||||    
T  4306474 aaccttgaattctccaaaagtggaaccaaacttacattaaactttatttataattgacttgatatttgagtttttcccaaaaaaaaaatgaagtcttttg 4306375  T
Q  482 acaaaaataaaacaatactttggagataagattttcaatatttg 525  Q
    |||||||| ||||||||||||| |||||||||||||||||||||    
T  4306374 acaaaaatcaaacaatactttgaagataagattttcaatatttg 4306331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 4307451 - 4307271
Alignment:
Q  12 agagagccatgtcatagattcatcaattggtttattagtggttgttggattgcttgtttgatatggtgccttggcagcaattctgcagaagcataaacaa 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4307451 agagagccatgtcatagattcatcaattggtttattaatggttgttggattgcttgtttgatatggtgccttggcagcaattctgcagaagcataaacaa 4307352  T
Q  112 acataccagtcaatatggatcccaaacatcataatagtgtatcttttgttctgaatgagaaaaattgattttgaatgaact 192  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4307351 acatatcaatcaatatggatcccaaacatcataatagtgtatcttttgttctgtatgagaaaaattgattttgaatgaact 4307271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 13 - 121
Target Start/End: Complemental strand, 4301714 - 4301606
Alignment:
Q  13 gagagccatgtcatagattcatcaattggtttattagtggttgttggattgcttgtttgatatggtgccttggcagcaattctgcagaagcataaacaaa 112  Q
    |||||||||| |||  |||| | |||||| ||||||  | ||||||| || |||||||||||||||||||| |||||||||||| |||| ||||||||||    
T  4301714 gagagccatgacatgaattcgttaattggcttattaaggtttgttgggttacttgtttgatatggtgcctttgcagcaattctgtagaaacataaacaaa 4301615  T
Q  113 cataccagt 121  Q
    |||| ||||    
T  4301614 catatcagt 4301606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 4296226 - 4296090
Alignment:
Q  13 gagagccatgtcatagattcatcaattggtttattagtggttgttggattgcttgtttgatatggtgccttggcagcaattctgcagaagcataaacaaa 112  Q
    |||||||||| |||  |||||| |||||| ||||||  | || || | || |||||||||||||||||| | |||||||||||| |||| ||||||||||    
T  4296226 gagagccatgacatgaattcattaattggcttattatggtttttttggttacttgtttgatatggtgccctagcagcaattctgtagaaacataaacaaa 4296127  T
Q  113 cataccagt--caatatggatcccaaacatcataata 147  Q
     ||| ||||   |||||||||| |||| |||||||||    
T  4296126 gatatcagtaaaaatatggatcacaaaaatcataata 4296090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 4312006 - 4311890
Alignment:
Q  16 agccatgtcatagattcatcaattggtttattagtg---gttgttggattgcttgtttgatatggtgccttggcagcaattctgcagaagcataaacaaa 112  Q
    ||||||| ||| |||||||||||||| ||||||  |   | || |||||| ||||||||||| |||||||| |||||||||||||| ||  | | |||||    
T  4312006 agccatgacatggattcatcaattggcttattaaggaatgctgctggattacttgtttgataaggtgcctttgcagcaattctgcaaaa--aaagacaaa 4311909  T
Q  113 cataccagtcaatatggat 131  Q
    |||| ||||||||||||||    
T  4311908 catatcagtcaatatggat 4311890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 35138982 - 35139059
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||||  ||||||||||||||||  ||||||||||| | |||  || ||||||||||||||| |||| ||||    
T  35138982 attgagttgaaggtaaaatgatttatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtggaaaa 35139059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 32693816 - 32693769
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||| |||||||||| |||||||| |||||||||||||||| ||||    
T  32693816 attgaggtgaatataaagtgatttatatttggatacattcatgcaaaa 32693769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 6095304 - 6095358
Alignment:
Q  233 aaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaattta 287  Q
    ||||||||||||||||| ||| ||| ||||||||| ||||| |||||| ||||||    
T  6095304 aaaatgatttatgtttgaatatatttatgtaaaaatgaatttaacaatgaattta 6095358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 10273301 - 10273337
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacatt 257  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  10273301 tgagttgaatataaaatgatttatgcttgaatacatt 10273337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 35439221 - 35439177
Alignment:
Q  240 tttatgtttggatacattcatgtaaaaaagaattgaacaataaat 284  Q
    |||||||||||||||||| | ||||||| || |||||||||||||    
T  35439221 tttatgtttggatacattaacgtaaaaatgagttgaacaataaat 35439177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 22310418 - 22310495
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    ||||||||||| |||||| |||||||||||||||||||||  ||||||  |||||||| |||||||||||||||||||    
T  22310418 attgagttgaagataaaaagatttatgtttggatacattctcgtaaaagtgaattgaaaaataaatttaagtgtaaaa 22310495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 40561717 - 40561791
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgta 293  Q
    |||||||||||  |||| ||||||||||||||||||||||||||||||  || |||||||||| |||| ||||||    
T  40561717 attgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaatatatttgagtgta 40561791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 33853445 - 33853490
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||  |||| ||||||||||||||||||||||||||||||    
T  33853445 tgagttgaagctaaagtgatttatgtttggatacattcatgtaaaa 33853490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 40491750 - 40491657
Alignment:
Q  174 aattgattttgaatgaactgattccgtaaaattgattct-agtttgattgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||||| |||| |||||| |||||||||||| | | |   | |||||||||  |||| |||||||| |||||||||||||||||||||    
T  40491750 aattgattttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaa 40491657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 29829330 - 29829377
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaa 268  Q
    |||||||||| |||| ||||||||||||||||||||||| ||| ||||    
T  29829330 tgagttgaatgtaaagtgatttatgtttggatacattcaggtacaaaa 29829377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 12306847 - 12306802
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    ||||||||| ||||| |||||||||||||| || ||||||||||||    
T  12306847 tgagttgaagataaagtgatttatgtttggctagattcatgtaaaa 12306802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 25156324 - 25156279
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    ||||||||| |||||||||||| |||||| |||||||||| |||||    
T  25156324 tgagttgaagataaaatgatttgtgtttgaatacattcatataaaa 25156279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 26975317 - 26975362
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||| |||||||||||||||||| |||| || ||||||||    
T  26975317 tgagttgaatgtaaaatgatttatgtttgaatacgtttatgtaaaa 26975362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 27365575 - 27365620
Alignment:
Q  237 tgatttatgtttggatacattcatgtaaaaaagaattgaacaataa 282  Q
    ||||||||||||  |||||||| |||||||| ||||||||||||||    
T  27365575 tgatttatgttttaatacattcgtgtaaaaatgaattgaacaataa 27365620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 38123625 - 38123702
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||||  |||| | |||| |||| ||| ||||||||||||||  || |||| |||||||||| |||||||||    
T  38123625 attgagttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtgtaaaa 38123702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 45557489 - 45557444
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||  |||| |||||| |||||||||||||||||||||||    
T  45557489 tgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaa 45557444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 7979870 - 7979830
Alignment:
Q  225 ttgaatataaaatgatttatgtttggatacattcatgtaaa 265  Q
    |||||||| |||||||  |||||||||||||||||||||||    
T  7979870 ttgaatatgaaatgatacatgtttggatacattcatgtaaa 7979830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 181 - 292
Target Start/End: Original strand, 55927690 - 55927802
Alignment:
Q  181 tttgaatgaactgattccgtaaaattgattctagtttga-ttgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaa 279  Q
    |||||||||| ||||| |||||||||||||| ||||  | |||||||| |  |||  ||||||||||||||||||||||||||||||  || ||||||||    
T  55927690 tttgaatgaattgatttcgtaaaattgattccagttaaaattgagttggagttaatgtgatttatgtttggatacattcatgtaaaagtgacttgaacaa 55927789  T
Q  280 taaatttaagtgt 292  Q
    ||||||| |||||    
T  55927790 taaatttgagtgt 55927802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 41751233 - 41751308
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||| || ||||| ||||| ||||||| ||||||||||||||||  ||||| |||||||||||||||| |||||    
T  41751233 tgagttcaagataaagtgattaatgtttgaatacattcatgtaaaactgaattaaacaataaatttaagtttaaaa 41751308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 55244718 - 55244647
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagt 290  Q
    ||||||||||| |||||||| || ||||||||||||||| |||||||||  | ||||| |||||||||||||    
T  55244718 attgagttgaagataaaatggttaatgtttggatacatttatgtaaaaataagttgaagaataaatttaagt 55244647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 22683988 - 22683913
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||  ||||||| |||||||||||| ||||| ||||||||  || ||||||||||||||| | |||||||    
T  22683988 tgagttgaaagtaaaatggtttatgtttggacacatttatgtaaaagcgagttgaacaataaatttcaatgtaaaa 22683913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 36639919 - 36639848
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgt 292  Q
    ||||||||| ||||| ||||||||||||||||||||||||||| |      |||||||||||||||||||||    
T  36639919 tgagttgaagataaagtgatttatgtttggatacattcatgtacaggtatgttgaacaataaatttaagtgt 36639848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 17898089 - 17898150
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataa 282  Q
    |||||||||| |||| ||||||||||||||||| ||| | ||||||  ||||||||||||||    
T  17898089 tgagttgaatgtaaagtgatttatgtttggatatatttaggtaaaagtgaattgaacaataa 17898150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 47144340 - 47144263
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    ||||||||||| ||| | |||||||||||||||||||||||| |||||   | ||| ||||||||||| || ||||||    
T  47144340 attgagttgaagatatattgatttatgtttggatacattcatctaaaagttagttggacaataaattttagcgtaaaa 47144263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 22250349 - 22250285
Alignment:
Q  222 gagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaattt 286  Q
    ||||||||| | || |||||||  |||||||||||||||||||||  |||| |||||||||||||    
T  22250349 gagttgaatgtgaagtgatttacatttggatacattcatgtaaaagtgaatcgaacaataaattt 22250285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 33843835 - 33843771
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatt 285  Q
    ||||||| || |||| ||||||||||||||||| |||||||||| |  || ||||||||||||||    
T  33843835 tgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaacaataaatt 33843771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 43868311 - 43868215
Alignment:
Q  171 aaaaattgattttgaatgaactgattccgtaaaattgattctagtt-tgattgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||||||||||||| |||||  |||||||| |||||||||   | | |||||||  |||| |||||| | |||||||||||| ||||||||    
T  43868311 aaaaattgattttgaatgaattgattttgtaaaattaattctagttaaaagtaagttgaaagtaaagtgatttgtctttggatacatttatgtaaaa 43868215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 7223149 - 7223102
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaa 268  Q
    |||||| || |||||||||||||||||| ||||||||||| |||||||    
T  7223149 tgagtttaagataaaatgatttatgtttagatacattcatttaaaaaa 7223102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 43628238 - 43628175
Alignment:
Q  225 ttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaa 288  Q
    |||||||| || |||||||| ||||||| ||||||| |||| | || |||||||||||||||||    
T  43628238 ttgaatatcaagtgatttatatttggatgcattcatataaatacgagttgaacaataaatttaa 43628175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 8604594 - 8604628
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||| ||||||||||||||||||||||||||||||    
T  8604594 taaagtgatttatgtttggatacattcatgtaaaa 8604628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 24364097 - 24364143
Alignment:
Q  166 atgagaaaaattgattttgaatgaactgattccgtaaaattgattct 212  Q
    |||| |||||||||||||||||||| |||||  ||||||||||||||    
T  24364097 atgacaaaaattgattttgaatgaattgattatgtaaaattgattct 24364143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 295
Target Start/End: Complemental strand, 29904404 - 29904282
Alignment:
Q  174 aattgattttgaatgaactgattccgtaaaattgattctag-tttgattgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaat 272  Q
    ||||| |||||| |||| |||||| | ||||||||||| || |   |||||||||||| | || | |||||||||  |||| ||||| |||| |  ||||    
T  29904404 aattgtttttgagtgaattgattctgcaaaattgattcaagataaaattgagttgaatgtgaagtaatttatgttatgatatattcaagtaatagtgaat 29904305  T
Q  273 tgaacaataaatttaagtgtaaa 295  Q
    |||||||||||||| ||||||||    
T  29904304 tgaacaataaatttgagtgtaaa 29904282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 10185305 - 10185244
Alignment:
Q  235 aatgatttatgttt-ggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaa 295  Q
    |||||||||||||| ||||||||| ||||||||  || || |||||||||||| ||||||||    
T  10185305 aatgatttatgttttggatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaa 10185244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 39438751 - 39438686
Alignment:
Q  348 aaacatgtcagaatcaatttcacacctctaaaatcaaccttgaattcttcaaaagtggaaccaaac 413  Q
    |||||||||| ||||||||| ||||||| ||||||||  |||| | || |||| ||||||||||||    
T  39438751 aaacatgtcaaaatcaattttacacctccaaaatcaattttgactactccaaacgtggaaccaaac 39438686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 54487253 - 54487294
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgt 262  Q
    |||||||||| |||| ||||||||||||||||||||| ||||    
T  54487253 tgagttgaatgtaaattgatttatgtttggatacattgatgt 54487294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 221 - 292
Target Start/End: Original strand, 35264372 - 35264443
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgt 292  Q
    |||||||||  |||| ||| |||||||||| |||||||||||||||| || |||||||||||||||||||||    
T  35264372 tgagttgaaagtaaagtgagttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgt 35264443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 174 - 282
Target Start/End: Complemental strand, 30958209 - 30958099
Alignment:
Q  174 aattgattttgaatgaactgattccgtaaaattgattctagtttgat-tgagttgaatataaaatg-atttatgtttggatacattcatgtaaaaaagaa 271  Q
    ||||||||||||||||| |||||  |||||||||||| | | |  || |||||||||| |||| |  ||||||||||||||| ||||||||||||  |||    
T  30958209 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtgaa 30958110  T
Q  272 ttgaacaataa 282  Q
    |||||||||||    
T  30958109 ttgaacaataa 30958099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 174 - 282
Target Start/End: Complemental strand, 30974021 - 30973911
Alignment:
Q  174 aattgattttgaatgaactgattccgtaaaattgattctagtttgat-tgagttgaatataaaatg-atttatgtttggatacattcatgtaaaaaagaa 271  Q
    ||||||||||||||||| |||||  |||||||||||| | | |  || |||||||||| |||| |  ||||||||||||||| ||||||||||||  |||    
T  30974021 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtgaa 30973922  T
Q  272 ttgaacaataa 282  Q
    |||||||||||    
T  30973921 ttgaacaataa 30973911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 37334993 - 37335070
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||||  |||| |||||||||| || |||||||||| |||||| || ||||||||| |||| ||||||||||    
T  37334993 attgagttgaaggtaaagtgatttatgtctgaatacattcatataaaaatgagttgaacaatgaattcaagtgtaaaa 37335070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 41591314 - 41591359
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||    
T  41591314 tgagttgaatttaaagtgatttatgtttggatacattcatgtaaaa 41591359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 36302311 - 36302228
Alignment:
Q  219 attgagttgaatataaaa--tgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtg-taaaatca 299  Q
    ||||||||||| ||||||  ||||| |||| ||||| |||||||||||||  || |||||||||||||||||||| ||||||||    
T  36302311 attgagttgaagataaaaaatgattaatgtgtggattcattcatgtaaaagtgagttgaacaataaatttaagtgctaaaatca 36302228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 38332531 - 38332589
Alignment:
Q  237 tgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaa 295  Q
    ||||||||||||| ||||||||||| | ||| || ||||||||||||||| ||||||||    
T  38332531 tgatttatgtttgtatacattcatggataaatgagttgaacaataaatttgagtgtaaa 38332589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 3776648 - 3776571
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||||| |||| ||||||||| ||||||||||| ||||||||  || || | ||| |||||| |||||||||    
T  3776648 attgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagttcagcaacaaatttgagtgtaaaa 3776571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 48089610 - 48089687
Alignment:
Q  181 tttgaatgaactgattccgtaaaattgattctagtttgat-tgagttgaatataaaatgatttatgtttggatacatt 257  Q
    ||||||| || ||||||  |||||||||||||||||  |  |||||||||| |||||||||||||| |||||||||||    
T  48089610 tttgaataaattgattctttaaaattgattctagttaaaagtgagttgaatgtaaaatgatttatgattggatacatt 48089687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 41596108 - 41596155
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||||| |||| |||||| |||||||||||||||||| ||||    
T  41596108 attgagttgaatgtaaagtgatttctgtttggatacattcatggaaaa 41596155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 7298282 - 7298356
Alignment:
Q  225 ttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaatca 299  Q
    |||||| | |||||||||||||||||||||||| || ||||||    ||||||||||||||| |||  |||||||    
T  7298282 ttgaatgttaaatgatttatgtttggatacatttatttaaaaagttgttgaacaataaatttcagttaaaaatca 7298356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 49526713 - 49526747
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||| ||||||||||||||||||||||||||||||    
T  49526713 taaattgatttatgtttggatacattcatgtaaaa 49526747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 296
Target Start/End: Original strand, 33791973 - 33792042
Alignment:
Q  228 aatataaaatgatttatgtttggatacattcatgtaaaaaaga-attgaacaataaatttaagtgtaaaa 296  Q
    |||| |||||||||| |||||||||| ||||||||||||  ||  || ||||||||||||| ||||||||    
T  33791973 aataaaaaatgatttgtgtttggatagattcatgtaaaagtgagtttaaacaataaatttatgtgtaaaa 33792042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 40339345 - 40339272
Alignment:
Q  226 tgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaatca 299  Q
    ||||| |||| || |||||||||||||| ||| | ||||||  ||||||||||||||||| |||  ||||||||    
T  40339345 tgaatgtaaagtggtttatgtttggatatatttaggtaaaagtgaattgaacaataaattcaaggctaaaatca 40339272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 292
Target Start/End: Complemental strand, 43661953 - 43661892
Alignment:
Q  231 ataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgt 292  Q
    ||||||| ||||||||||  ||||||||||||||||  || |||||||||| ||||| ||||    
T  43661953 ataaaataatttatgtttttatacattcatgtaaaagtgagttgaacaatacatttatgtgt 43661892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 43965747 - 43965682
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaat 297  Q
    ||||||||||||| |||| |||||||||  | |||| || ||||||||||| ||| ||||||||||    
T  43965747 taaaatgatttatctttgaatacattcacctgaaaatgagttgaacaataattttgagtgtaaaat 43965682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 27266766 - 27266830
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||| |||||||||||| ||||  |||||||||||   | ||||||||||||||| |||||||||    
T  27266766 taaagtgatttatgtttagatattttcatgtaaaagttagttgaacaataaatttgagtgtaaaa 27266830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 47278832 - 47278792
Alignment:
Q  220 ttgagttgaatataaaatgatttatgtttggatacattcat 260  Q
    ||||||||||| |||||||||||||||||| ||| ||||||    
T  47278832 ttgagttgaatgtaaaatgatttatgtttgaatatattcat 47278792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 296
Target Start/End: Complemental strand, 32767513 - 32767436
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattca--tgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    ||||||| || |||| |||||||||||||||||||||||  |||||||  || |||||||||||||||||||||||||    
T  32767513 tgagttggatgtaaattgatttatgtttggatacattcatgtgtaaaagtgagttgaacaataaatttaagtgtaaaa 32767436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 16972025 - 16972090
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaattt 286  Q
    |||||||||  ||||||||||| |||||| ||||||||||||||||  || |||||||||||||||    
T  16972025 tgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaattt 16972090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 296
Target Start/End: Complemental strand, 32928064 - 32927941
Alignment:
Q  174 aattgattttgaatgaactgattccgtaaaattgattct-agtttgattgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaat 272  Q
    ||||||||||||  ||| |||||  |||||||||||||| | |   |||||||||||   ||| |||||| |||||||||||||||||||||||  || |    
T  32928064 aattgattttgagggaattgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagt 32927965  T
Q  273 tgaacaataaatttaagtgtaaaa 296  Q
    ||||| ||||||||  ||||||||    
T  32927964 tgaactataaatttgtgtgtaaaa 32927941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 2764432 - 2764494
Alignment:
Q  223 agttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatt 285  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||  || |||||| |||||||    
T  2764432 agttgaatataaagtgatttatatttggatacattcacgtaaaagtgagttgaaccataaatt 2764494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 43492209 - 43492243
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||||||||||||||||||||||||||||    
T  43492209 taaaatgatttatgtttggatacattcatgtaaaa 43492243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 4950609 - 4950532
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||||  |||| ||||||||||||||||| ||| |||  |||  || ||||| |||||||||||||||||||    
T  4950609 attgagttgaaggtaaagtgatttatgtttggatatatttatgagaaagtgagttgaaaaataaatttaagtgtaaaa 4950532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 36447709 - 36447774
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaattt 286  Q
    |||||||||||||||||||||| ||||| |||||||| ||||| ||  || ||||| |||||||||    
T  36447709 tgagttgaatataaaatgatttgtgtttagatacatttatgtataactgagttgaataataaattt 36447774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 3206171 - 3206107
Alignment:
Q  231 ataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaa 295  Q
    ||||||||| || |||||| ||||||| || ||||||  |||| |||||||||||||||||||||    
T  3206171 ataaaatgaattttgtttgaatacatttatataaaaataaattaaacaataaatttaagtgtaaa 3206107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 4554632 - 4554556
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaa 295  Q
    |||||||||||  ||| ||||||| ||||| ||||||||| |||||||  |  ||||||||||||||||||| ||||    
T  4554632 attgagttgaaggtaagatgatttgtgttttgatacattcctgtaaaagcgggttgaacaataaatttaagtataaa 4554556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 32994153 - 32994248
Alignment:
Q  174 aattgattttgaatgaactgattccgtaaaattgattctag-tttgattgagttgaatataaaa--tgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||||||||||||||||  |||||||||||||| | |   | |||||||||  |||||  |||||||||||||||  |||||||||||||    
T  32994153 aattgattttgaatgaactgattatgtaaaattgattctggctgaaagtgagttgaaggtaaaatttgatttatgtttggactcattcatgtaaaa 32994248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 42458311 - 42458367
Alignment:
Q  240 tttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||| ||||||||||||||||||| || |||||||||| | | ||||||||||    
T  42458311 tttatgttcggatacattcatgtaaaaatgagttgaacaatatactcaagtgtaaaa 42458367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 35495368 - 35495309
Alignment:
Q  237 tgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||||||||||||||||  |||||  || ||||||||||||||| ||| |||||    
T  35495368 tgatttatgtttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaa 35495309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 35495111 - 35495069
Alignment:
Q  224 gttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||||| |||||| |||||||||| ||||||||||||    
T  35495111 gttgaatataaagtgatttgtgtttggatatattcatgtaaaa 35495069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 10368089 - 10368037
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaatt 273  Q
    |||||||||  |||| |||||| ||||| |||||||||||||||||| |||||    
T  10368089 tgagttgaaggtaaagtgatttgtgtttagatacattcatgtaaaaatgaatt 10368037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 32736575 - 32736511
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||| |||| | |||| ||||||||||||||||  ||||||||| ||||||||  ||||||||    
T  32736575 taaaataatttgtatttgaatacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaa 32736511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 882829 - 882735
Alignment:
Q  203 aattgattctagtttga-ttgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    ||||||||||||||  | ||||||||||  |||||||||||||||||||||||||||||| ||||  || || |||||||||||| | |||||||    
T  882829 aattgattctagttaaaattgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttgaatgtaaaa 882735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 32888916 - 32888985
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaa 288  Q
    ||||||||||| ||||||||||||||||||| ||| ||| ||||||||  || |||||||||||||||||    
T  32888916 attgagttgaagataaaatgatttatgtttgaatatatttatgtaaaagtgagttgaacaataaatttaa 32888985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 34621012 - 34620935
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||||  |||| ||||||||||||||||||||| ||||||||  || ||||| ||||||||| |||||||||    
T  34621012 attgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaa 34620935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 34748449 - 34748372
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||||  |||| ||||||||||||||||||||| ||||||||  || ||||| ||||||||| |||||||||    
T  34748449 attgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaa 34748372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 957594 - 957630
Alignment:
Q  231 ataaaatgatttatgtttggatacattcatgtaaaaa 267  Q
    |||||||||||||||||||||||||||||||||||||    
T  957594 ataaaatgatttatgtttggatacattcatgtaaaaa 957630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 7486543 - 7486479
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    ||||||||||||||||||||||  ||||||| |||  |||||||||||  |||||||||||||||    
T  7486543 taaaatgatttatgtttggataagttcatgtgaaagtgaattgaacaaacaatttaagtgtaaaa 7486479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 3799024 - 3798978
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaa 267  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||||    
T  3799024 tgagttgaagataaaatgatttatgtttttatacattcatgtaaaaa 3798978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 30926751 - 30926814
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||||||||||| ||| |||||||  ||||  ||||||||||||||||| |||||||||    
T  30926751 taaaatgatttatgtttgaatatattcatg-caaaagtaattgaacaataaatttgagtgtaaaa 30926814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 25208750 - 25208705
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||| ||||||||||||||||| |||| ||| ||||||||    
T  25208750 tgagttgaatgtaaaatgatttatgtttcgatagatttatgtaaaa 25208705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 418
Target Start/End: Original strand, 29240575 - 29240644
Alignment:
Q  349 aacatgtcagaatcaatttcacacctctaaaatcaaccttgaattcttcaaaagtggaaccaaacttaca 418  Q
    ||||||||| ||||||||| ||||||||| ||||||  |||| | |  ||||||||||||||||| ||||    
T  29240575 aacatgtcaaaatcaattttacacctctagaatcaattttgattcccccaaaagtggaaccaaacataca 29240644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 31305819 - 31305880
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgta 293  Q
    |||||| ||||||||||||||| ||| ||||||||  || |||| |||||||||| ||||||    
T  31305819 taaaatcatttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgta 31305880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 8120840 - 8120900
Alignment:
Q  224 gttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaat 284  Q
    ||||||| |||||| |||||| ||| ||||||||||||||||||  | |||| ||||||||    
T  8120840 gttgaatgtaaaattatttatatttagatacattcatgtaaaaatcagttgagcaataaat 8120900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 34026596 - 34026655
Alignment:
Q  239 atttatgtttggatac--attcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||||||| |  ||||||||||||| || ||||| ||| |||||||||||||||    
T  34026596 atttatgtttggatgcgtattcatgtaaaaatgagttgaataattaatttaagtgtaaaa 34026655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 15220822 - 15220896
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaa 295  Q
    |||||||||| |||| |||||||||||||||||||||||||| |||  || |||||||||||||| |||| ||||    
T  15220822 tgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgagttgaacaataaattgaagtctaaa 15220896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 1976823 - 1976900
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||||  ||||  || ||||||||||||||||||||||||||  || || |||||||||||| |||||||||    
T  1976823 attgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtgagttcaacaataaatttgagtgtaaaa 1976900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 3853977 - 3853932
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||    
T  3853977 tgagttgaatgtaaattgatttatgtttggatacattcatgtaaaa 3853932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 16518891 - 16518837
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaattt 286  Q
    ||||||||||| |||||||||||||||||||||||  || |||||| ||||||||    
T  16518891 taaaatgatttgtgtttggatacattcatgtaaaagtgagttgaactataaattt 16518837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 43717498 - 43717384
Alignment:
Q  173 aaattgattttgaatgaactgattccgtaaaattgattctagtttgat-tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaa-ga 270  Q
    ||||||||| |||||||||| |||  |||||||||||||||  |  || | ||| || | |||| ||||||||||||||||| |||  ||||||||| ||    
T  43717498 aaattgattctgaatgaactaattttgtaaaattgattctaactaaatgttagtcgagtgtaaagtgatttatgtttggatatatttgtgtaaaaaatga 43717399  T
Q  271 attgaacaataaatt 285  Q
    |||||||||||||||    
T  43717398 attgaacaataaatt 43717384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 4908903 - 4908846
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaag 289  Q
    |||| |||||||||||||||||||||||||| |||  | ||||||||||||| |||||    
T  4908903 taaagtgatttatgtttggatacattcatgttaaagtggattgaacaataaagttaag 4908846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 14532777 - 14532818
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcat 260  Q
    ||||||||||| |||||||||||||||||| |||||||||||    
T  14532777 attgagttgaaaataaaatgatttatgtttagatacattcat 14532818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 44439378 - 44439307
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgt 292  Q
    |||||| ||| |||| |||||||||||||||||  || ||||||||  || ||||||||||||||| |||||    
T  44439378 tgagttaaatgtaaagtgatttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgt 44439307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 38129423 - 38129465
Alignment:
Q  171 aaaaattgattttgaatgaactgattccgtaaaattgattcta 213  Q
    |||||||||||||||||||| |||||| ||||||| |||||||    
T  38129423 aaaaattgattttgaatgaattgattctgtaaaatggattcta 38129465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 296
Target Start/End: Original strand, 680197 - 680326
Alignment:
Q  167 tgagaaaaattgattttgaatgaactgattccgtaaaattgattctagtttgattgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    ||||| ||||||||||||| |||| |||||  ||||| |||| |||   |  |||||||||||  |||| || ||| |||||| ||||||||||||||||    
T  680197 tgagagaaattgattttgagtgaattgattatgtaaagttgagtctgtctaaattgagttgaaggtaaagtgttttgtgtttgcatacattcatgtaaaa 680296  T
Q  267 aagaattgaacaataaatttaagtgtaaaa 296  Q
      || |||||   ||||||| |||||||||    
T  680297 gtgagttgaattctaaattttagtgtaaaa 680326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 12110951 - 12110918
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatac 254  Q
    ||||||||||||||| ||||||||||||||||||    
T  12110951 tgagttgaatataaagtgatttatgtttggatac 12110918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 32307210 - 32307133
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    ||||||| |||| |||||||  |||| |||||||| |||||  |||||  || ||||||||||||| |||||||||||    
T  32307210 attgagtcgaatgtaaaatggcttatatttggataaattcacataaaagtgagttgaacaataaatataagtgtaaaa 32307133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 423
Target Start/End: Complemental strand, 7629830 - 7629750
Alignment:
Q  343 gaacaaaacatgtcagaatcaatttcacacctctaaaatcaaccttgaattcttcaaaagtggaaccaaacttacattaaa 423  Q
    |||| ||||||| || ||||||||  ||||||||| |||||| ||||  | || ||||||||||||||||| |||| ||||    
T  7629830 gaaccaaacatgacaaaatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaacatacactaaa 7629750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 40401622 - 40401666
Alignment:
Q  239 atttatgtttggatacattcatgtaaaaaagaattgaacaataaa 283  Q
    ||||||||||||||||||||||||||||   | ||||||||||||    
T  40401622 atttatgtttggatacattcatgtaaaagtcagttgaacaataaa 40401666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 14073 - 14150
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||||  |||| |||||||||||||||||||||||||| |||  || ||||| ||||||||| |||||||||    
T  14073 attgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaa 14150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 44786879 - 44786946
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaa 288  Q
    |||||||||| |||||||||||||||| | ||||||||||||||||  ||||| ||||| ||||||||    
T  44786879 tgagttgaatgtaaaatgatttatgttcgaatacattcatgtaaaagtgaattcaacaacaaatttaa 44786946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 296
Target Start/End: Complemental strand, 1514449 - 1514392
Alignment:
Q  239 atttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||| |||||||||||||||||||||||| || |||||||||||||||  ||||||||    
T  1514449 atttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaa 1514392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 48548973 - 48549038
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaat 284  Q
    |||||||||||  ||||||||||||||||| |||||||| ||||||||  || |||||||||||||    
T  48548973 attgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaagtgagttgaacaataaat 48549038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 4458494 - 4458433
Alignment:
Q  237 tgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaatc 298  Q
    |||||||| |||||||||||||| ||||||  |||||| |||||||||| |||||| |||||    
T  4458494 tgatttatatttggatacattcaggtaaaagtgaattgtacaataaattcaagtgttaaatc 4458433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 18325073 - 18325114
Alignment:
Q  225 ttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    ||||||||||| |||||||||| |||||||||||||||||||    
T  18325073 ttgaatataaagtgatttatgtatggatacattcatgtaaaa 18325114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 52263626 - 52263683
Alignment:
Q  239 atttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    ||||||||||||||||||| ||||||||  || || |||||||||||| |||||||||    
T  52263626 atttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaa 52263683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 1233418 - 1233354
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||| |||||||||| ||||||||||||| |||  || || |||||||||||| |||||||||    
T  1233418 taaaataatttatgtttagatacattcatgtgaaagtgagttcaacaataaatttgagtgtaaaa 1233354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 28464957 - 28465021
Alignment:
Q  222 gagttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaattt 286  Q
    ||||||||| ||| ||||||||||||||  |||||| ||||||||| |  |||||||||||||||    
T  28464957 gagttgaatgtaacatgatttatgtttgtgtacatttatgtaaaaatgggttgaacaataaattt 28465021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 50845271 - 50845207
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||| ||||| |||||||| |||| || |||| || ||||||||||||||||||| |||||    
T  50845271 taaaatgaattatggttggatacgttcacgttaaaatgagttgaacaataaatttaagtataaaa 50845207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 3016280 - 3016212
Alignment:
Q  225 ttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaa 295  Q
    ||||||||||| ||||  ||||||||||||||||||||||||  || ||||||  |||||||| |||||||    
T  3016280 ttgaatataaagtgat--atgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaa 3016212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 12119432 - 12119389
Alignment:
Q  223 agttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    ||||||||||||| |||||||||||||||| || ||||||||||    
T  12119432 agttgaatataaagtgatttatgtttggattcaatcatgtaaaa 12119389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 27500397 - 27500334
Alignment:
Q  233 aaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    ||||| |||||||| |||||   |||||||||||| || ||||||||||||||| |||||||||    
T  27500397 aaaataatttatgtctggatgtgttcatgtaaaaatgagttgaacaataaatttgagtgtaaaa 27500334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 27849286 - 27849219
Alignment:
Q  199 gtaaaattgattctagtttgattgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||| |||  ||| | |||||||||  ||||||||||| |||| ||||||||||||||||||    
T  27849286 gtaaaattgagtcttatttaagtgagttgaaggtaaaatgatttgtgttaggatacattcatgtaaaa 27849219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 299
Target Start/End: Complemental strand, 45557476 - 45557353
Alignment:
Q  171 aaaaattgattttgaatgaactgattccgtaaaattgattctagtttgattgagttgaatataaaatgatttatgtttggatacattcatgtaaaaaaga 270  Q
    ||||||||||||||||| || |||||  |||||||||||| | | |  | ||||| ||| ||||| |||||||||||||| ||    |||||||||  ||    
T  45557476 aaaaattgattttgaataaattgattgtgtaaaattgattatggctaaagtgagtcgaacataaagtgatttatgtttggtta----catgtaaaagtga 45557381  T
Q  271 attgaacaataaatttaagtgtaaaatca 299  Q
     |||||||||||||| |||| ||||||||    
T  45557380 gttgaacaataaattcaagt-taaaatca 45557353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 213246 - 213300
Alignment:
Q  225 ttgaatataaaatgatttatgtttggatacattcatgtaaaaaagaattgaacaa 279  Q
    |||||| |||| |||||||||||||||||||| |||||||||  || ||||||||    
T  213246 ttgaatgtaaagtgatttatgtttggatacatgcatgtaaaagtgagttgaacaa 213300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 34915179 - 34915145
Alignment:
Q  232 taaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||||||||||| ||||||||||||||||    
T  34915179 taaaatgatttatgtttgaatacattcatgtaaaa 34915145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 27962092 - 27962145
Alignment:
Q  236 atgatttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaag 289  Q
    ||||||||||||||||||||||| | ||||||  | |||||| |||||||||||    
T  27962092 atgatttatgtttggatacattcgtataaaaattagttgaactataaatttaag 27962145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 29759743 - 29759710
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatac 254  Q
    |||||||||| |||||||||||||||||||||||    
T  29759743 tgagttgaatgtaaaatgatttatgtttggatac 29759710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 32369996 - 32370037
Alignment:
Q  225 ttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||| |||||| |||||| |||||||||||||||||||||||    
T  32369996 ttgattataaagtgatttgtgtttggatacattcatgtaaaa 32370037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 35961492 - 35961447
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatacattcatgtaaaa 266  Q
    |||||||||  |||||||||||||||||  ||||||||||||||||    
T  35961492 tgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaa 35961447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 6568687 - 6568631
Alignment:
Q  240 tttatgtttggatacattcatgtaaaaaagaattgaacaataaatttaagtgtaaaa 296  Q
    |||||||||| |||||||||  ||||||  | || ||||||||||||||||||||||    
T  6568687 tttatgtttgaatacattcacataaaaataagtttaacaataaatttaagtgtaaaa 6568631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 33693125 - 33693085
Alignment:
Q  222 gagttgaatataaaatgatttatgtttggatacattcatgt 262  Q
    ||||||||  |||| ||||||||||||||||||||||||||    
T  33693125 gagttgaacgtaaagtgatttatgtttggatacattcatgt 33693085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 34259148 - 34259192
Alignment:
Q  223 agttgaatataaaatgatttatgtttggatacattcatgtaaaaa 267  Q
    |||||||||||||||||||||| |||| ||||||| || ||||||    
T  34259148 agttgaatataaaatgatttatatttgaatacattaatataaaaa 34259192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 47981827 - 47981867
Alignment:
Q  219 attgagttgaatataaaatgatttatgtttggatacattca 259  Q
    |||||||||||| |||| |||||||||||||||||| ||||    
T  47981827 attgagttgaatttaaagtgatttatgtttggataccttca 47981867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 48635169 - 48635197
Alignment:
Q  237 tgatttatgtttggatacattcatgtaaa 265  Q
    |||||||||||||||||||||||||||||    
T  48635169 tgatttatgtttggatacattcatgtaaa 48635197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 254
Target Start/End: Original strand, 15290 - 15323
Alignment:
Q  221 tgagttgaatataaaatgatttatgtttggatac 254  Q
    ||||||||||||||| ||||||||||||||||||    
T  15290 tgagttgaatataaagtgatttatgtttggatac 15323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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