View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3499_low_9 (Length: 450)

Name: NF3499_low_9
Description: NF3499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3499_low_9
NF3499_low_9
[»] chr3 (8 HSPs)
chr3 (6-449)||(4581968-4582411)
chr3 (350-434)||(46490248-46490332)
chr3 (316-449)||(5155469-5155601)
chr3 (350-449)||(46478491-46478590)
chr3 (350-449)||(46469891-46469990)
chr3 (352-426)||(47414774-47414848)
chr3 (339-447)||(16024150-16024258)
chr3 (351-449)||(45901097-45901195)
[»] chr4 (2 HSPs)
chr4 (351-434)||(35160735-35160818)
chr4 (353-427)||(35154351-35154425)
[»] chr8 (2 HSPs)
chr8 (336-434)||(9693178-9693275)
chr8 (350-434)||(9677450-9677534)


Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 6 - 449
Target Start/End: Original strand, 4581968 - 4582411
Alignment:
Q  6 aggttcgtcacatggaattgctttggtcaattataattggtaattaccaaagtcgttaagttgttatctgaatatagagcaattcatacctccaaataca 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4581968 aggtttgtcacatggaattgctttggtcaattataattggtaattaccaaagtcgttaagttgttatctgaatatagagcaattcatacctccaaataca 4582067  T
Q  106 ttataactataaccctactttgtgatgaaataaacagttcgtaattttttattaaaaggcgacaacgatgactatttatctttaaaataagaacctactc 205  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4582068 ttataactataaccctactttgtgatgaaataaacagttcctaattttttattaaaaggcgacaacgatgactatttatctttaaaataagaacctactc 4582167  T
Q  206 tctacaccagaactagtgcactctctaatgtaagtgnnnnnnnnnnnnnnnnnnnctaattgtttgtgaaggtagaaactttaattcattagcaagaaat 305  Q
    ||||||||||||| ||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||||||||||    
T  4582168 tctacaccagaaccagtgcactctctaatgtaagtgaaataaaataaaaataaaactaattgtttgtgaaggtagaaactttaattcattagcaagaaat 4582267  T
Q  306 caaagtagagcatggattgcaatgaaaagagggagatataaaatacataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagata 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4582268 caaagtagagcatggattgcaatgaaaagagggagatataaaatacataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagata 4582367  T
Q  406 ctatttgttggaaggaaggttgcagagaacggctttgatcaacc 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4582368 ctatttgttggaaggaaggttgcagagaacggctttgatcaacc 4582411  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 434
Target Start/End: Complemental strand, 46490332 - 46490248
Alignment:
Q  350 acataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagatactatttgttggaaggaaggttgcagagaa 434  Q
    ||||| ||| |||||||||||||||||||||||  | || |||||||||||||| || ||||||| |||||||||||| ||||||    
T  46490332 acatatcttattcttgaaatcaacagaagacaaatttgctttataatcattagacacaatttgtttgaaggaaggttgaagagaa 46490248  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 449
Target Start/End: Complemental strand, 5155601 - 5155469
Alignment:
Q  316 catggattgcaatgaaaagagggagatataaaatacataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagatactatttgttg 415  Q
    |||||||||||   ||||||||| |||||| || |||||||||| | |||||||||||||||  ||| |||||||||||||||   || || |||| ||     
T  5155601 catggattgcagcaaaaagagggggatatacaa-acataccttggttttgaaatcaacagaaagcaaagtggccttataatcagaggacacgatttcttt 5155503  T
Q  416 gaaggaaggttgcagagaacggctttgatcaacc 449  Q
    |||||||||||| |||||| || |||| ||||||    
T  5155502 gaaggaaggttgaagagaaagggtttgttcaacc 5155469  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 449
Target Start/End: Complemental strand, 46478590 - 46478491
Alignment:
Q  350 acataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagatactatttgttggaaggaaggttgcagagaacggctttgatcaacc 449  Q
    |||||||||||||| ||||||||| |||||||| |  || ||| ||| | | || || |||||||||||||||||||| |||||| || |||||||||||    
T  46478590 acataccttgttctggaaatcaacggaagacaaagctgctttaaaatgagtggacacgatttgttggaaggaaggttgaagagaaagggtttgatcaacc 46478491  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 449
Target Start/End: Complemental strand, 46469990 - 46469891
Alignment:
Q  350 acataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagatactatttgttggaaggaaggttgcagagaacggctttgatcaacc 449  Q
    |||||||||||||| ||||||||| |||| ||| ||||| ||||||||| ||   | | ||| || |||||||||||| |||||| || |||||||||||    
T  46469990 acataccttgttctggaaatcaacggaagccaaagtggctttataatcagtaaccattgtttctttgaaggaaggttgaagagaaagggtttgatcaacc 46469891  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 426
Target Start/End: Original strand, 47414774 - 47414848
Alignment:
Q  352 ataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagatactatttgttggaaggaaggtt 426  Q
    ||||||||||||||||||| || |||||||| | |||||||||||||  | | || ||||||| |||||||||||    
T  47414774 ataccttgttcttgaaatctacggaagacaaagcggccttataatcaggatagacgatttgtttgaaggaaggtt 47414848  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 447
Target Start/End: Complemental strand, 16024258 - 16024150
Alignment:
Q  339 agatataaaatacataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagatactatttgttggaaggaaggttgcagagaacggc 438  Q
    ||||||| |||||||||||||||||  ||||||||||||   || || ||||| |||||||| || || ||||||| |||||| ||||  |||||| ||     
T  16024258 agatatacaatacataccttgttctgaaaatcaacagaatctaaagtagccttgtaatcattggacacaatttgttcgaaggagggtttaagagaaaggg 16024159  T
Q  439 tttgatcaa 447  Q
     ||||||||    
T  16024158 cttgatcaa 16024150  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 449
Target Start/End: Complemental strand, 45901195 - 45901097
Alignment:
Q  351 cataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagatactatttgttggaaggaaggttgcagagaacggctttgatcaacc 449  Q
    |||||||| |||  |||||||||| ||  ||  ||||| ||| |||| ||||| || |||||||||||||||||||| |||||| |  |||||||||||    
T  45901195 cataccttcttccggaaatcaacataaaccagagtggctttaaaatcgttagacacaatttgttggaaggaaggttgaagagaaagtgtttgatcaacc 45901097  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 434
Target Start/End: Complemental strand, 35160818 - 35160735
Alignment:
Q  351 cataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagatactatttgttggaaggaaggttgcagagaa 434  Q
    |||||||||||||||||||||||   |||||| |||||||||||||| | ||| || ||||||| |||||||| ||| ||||||    
T  35160818 cataccttgttcttgaaatcaacttcagacaaagtggccttataatcttcagacacgatttgtttgaaggaagattgaagagaa 35160735  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 427
Target Start/End: Complemental strand, 35154425 - 35154351
Alignment:
Q  353 taccttgttcttgaaatcaacagaagacaaggtggccttataatcattagatactatttgttggaaggaaggttg 427  Q
    ||||||||||| |||||||||||||||||| |||||||| |||||  |||  || || |||| ||||||||||||    
T  35154425 taccttgttctggaaatcaacagaagacaaagtggccttgtaatcggtagtcacgatatgtttgaaggaaggttg 35154351  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 434
Target Start/End: Original strand, 9693178 - 9693275
Alignment:
Q  336 gggagatataaaatacataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagatactatttgttggaaggaaggttgcagagaa 434  Q
    |||||||||| || |||||||||||||  |||||||||||||||||| |  |||||||||||| |||| |   ||| || |||||||||||| ||||||    
T  9693178 gggagatatacaa-acataccttgttccggaaatcaacagaagacaaagcagccttataatcagtagacatggtttctttgaaggaaggttgaagagaa 9693275  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 434
Target Start/End: Original strand, 9677450 - 9677534
Alignment:
Q  350 acataccttgttcttgaaatcaacagaagacaaggtggccttataatcattagatactatttgttggaaggaaggttgcagagaa 434  Q
    ||||||||||||  |||||||||||||||  |  ||||||||||||||  |||| |   ||| ||||||||||||||| ||||||    
T  9677450 acataccttgtttatgaaatcaacagaagcgagagtggccttataatcggtagacatggtttcttggaaggaaggttgaagagaa 9677534  T

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