View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_high_11 (Length: 339)
Name: NF3500_high_11
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 30393370 - 30393692
Alignment:
| Q |
1 |
tattaaagtaacagaatcacctaccaataacttgttacaagtactggtatgcgaagaacaccatactttgttcaattgtttcaaaaaatacacaaggcat |
100 |
Q |
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| T |
30393370 |
tattaaagtaacagaatcacctaccaataactagttacaagtactggtatgcgaagaacaccatactttgttcaattgtttcaaaaaatacacaaggcat |
30393469 |
T |
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| Q |
101 |
tttaaacaacaacaatgatatgacaaaagagattaacctaccataccaagaactagtaacaaaatgttggtatggaatttatataaagacactagagttt |
200 |
Q |
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| T |
30393470 |
tttaaacaacaacaatgatatgacaaaagagattaacctaccataccaagaactagtaacaaaatgttggtatggaatttatataaagacactagagttt |
30393569 |
T |
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| Q |
201 |
gtttcaatgagtatctagaaaatttaaaatgacaataattggctaaagaccttccaaaactaagaaaaccaaaacctgttgttgctaatagctataaaaa |
300 |
Q |
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| T |
30393570 |
gtttcaatgagtatctagaaaatttaaaatgacaataattggctaaagaccttccaaaactaagaaaaccaaaacctgttgtttctaatagctataaaaa |
30393669 |
T |
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| Q |
301 |
tgagattatgaagggaaattttg |
323 |
Q |
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| T |
30393670 |
tgagattatgaagggaaattttg |
30393692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 160 - 323
Target Start/End: Original strand, 30407125 - 30407286
Alignment:
| Q |
160 |
caaaatgttggtatggaatttatataaagacactagagtttgtttcaatgagtatctagaaaatttaaaatgacaataattggctaaagaccttccaaaa |
259 |
Q |
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| T |
30407125 |
caaaatattggtatggaaattgtataaagacactagtgt--gtttcaatgagtatctagaaaatttaaaatgataatgattggctaaagaccttccaaaa |
30407222 |
T |
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| Q |
260 |
ctaagaaaaccaaaacctgttgttgctaatagctataaaaatgagattatgaagggaaattttg |
323 |
Q |
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| T |
30407223 |
ctaagaaaaccaaaacctgttgttgctaatagctataaaaatgagattatgaagggaaattttg |
30407286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 30407044 - 30407080
Alignment:
| Q |
6 |
aagtaacagaatcacctaccaataacttgttacaagt |
42 |
Q |
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| T |
30407044 |
aagtaacaaaatcacctaccaataactagttacaagt |
30407080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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