View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3500_high_13 (Length: 308)

Name: NF3500_high_13
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3500_high_13
NF3500_high_13
[»] chr1 (1 HSPs)
chr1 (3-299)||(32188969-32189265)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 3 - 299
Target Start/End: Original strand, 32188969 - 32189265
Alignment:
Q  3 cctacaaactcctaaaatagaattcgcctaaactttttattataaaaaagagagaagcatatagtaaattatgaaatcaaaaagtggagtagacagtgac 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32188969 cctacgaactcctaaaatagaattcgcctaaactttttattataaaaaagagagaagcatatagtaaattatgaaatcaaaaagtggagtagatagtgac 32189068  T
Q  103 acttttgatctctttggacttccctattctataaatacttgagagcccccttctcttgtcctcaatatttagttaccattaccacttgagttcttgtgtc 202  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32189069 acttttgatgtctttggacttccctattctataaatacttgagagcccccttctcttgtcctcaatatttagttaccattaccacttgagttcttgtgtc 32189168  T
Q  203 tgagctttctcatctccaaaggcacagcacagtctaaaagctagctcttcatagtcatacttatgtcttgaaaaacaagaactagcacaacctatgc 299  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32189169 taagctttctcatctccaaaggcacagcacagtctaaaagctagctcttcatagtcatacttatgtcttgaaaaacaagaactagcacaacctatgc 32189265  T

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