View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3500_high_15 (Length: 285)
Name: NF3500_high_15
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_high_15 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 41895879 - 41896148
Alignment:
| Q |
16 |
atacacacacctatgcaaattgcaacctgaaatgaaagaaacgtaaannnnnnnnnnnnaatgacaaatataagagaaacatatattatattctgatttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41895879 |
atacacacacctatgcaaattgcaacctgaaatgaaagaaacgtaaatttttattttttaatgacaaatataagagaaacatatattatattctgatttt |
41895978 |
T |
|
| Q |
116 |
agattgttacattttttaaagaaaaattgctaatgtgaattgatcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41895979 |
agattgttacattttttaaagaaaaattgctaacgtgaattgatcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatca |
41896078 |
T |
|
| Q |
216 |
accacattatactaggaagctgaaataattcacaagaaaataattcatcttttgattttataattaattc |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41896079 |
accacattatactaggaagctgaaataattcacaagaaaataattcatcttttgattttataattaattc |
41896148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 260
Target Start/End: Original strand, 41890420 - 41890521
Alignment:
| Q |
159 |
tcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataattcacaagaaaataa |
258 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| || |||| ||||||||||||| ||||||||| |||||||||||||| |||| ||||| ||||| |
|
|
| T |
41890420 |
tcattacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataa |
41890519 |
T |
|
| Q |
259 |
tt |
260 |
Q |
| |
|
|| |
|
|
| T |
41890520 |
tt |
41890521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 22552153 - 22552070
Alignment:
| Q |
162 |
ttacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataatt |
245 |
Q |
| |
|
|||||||||| |||||||| ||||| || |||||| |||| ||||||||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
22552153 |
ttacccaatttatgaaccagttgatgctaaatctctttggtttcttgattattagccacattatactaggaagctgaaacaatt |
22552070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University