View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_high_19 (Length: 255)
Name: NF3500_high_19
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 43926157 - 43926317
Alignment:
| Q |
10 |
catcatcattcaaaaggtaatcatccccctaccaaaatataattaattagtttatatataaaatccaacatacgtcaaagcatatatggtcacatttctt |
109 |
Q |
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| T |
43926157 |
catcatcattcaaaaggtaatcatccccctaccaaaatataattaattagtttatatataaaatctaacatacgtcaaagcatatatggtcacatttctt |
43926256 |
T |
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| Q |
110 |
ttggtttctacatttcccattttcatgtaacatatattaaaataaagagtcttaaaaacaa |
170 |
Q |
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| T |
43926257 |
ttggtttctacatttcccattttcatgtaacatatattaaaataaagagtcttaaaaacaa |
43926317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 43926353 - 43926400
Alignment:
| Q |
206 |
ctgttgttgctattgatctatctattcatcatcaaaagaaaatttaat |
253 |
Q |
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| T |
43926353 |
ctgttgttgctattgatctatctattcatcatcaaaagaaaatttaat |
43926400 |
T |
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