View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_high_20 (Length: 254)
Name: NF3500_high_20
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 1915402 - 1915174
Alignment:
| Q |
10 |
aatattccctttcttttctccaccaccttcaaaaaccaacccttgaagttcatgtcaagtgtgttttatagatatatttatcatattatacattattcat |
109 |
Q |
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| T |
1915402 |
aatattccctttcttttctccaccaccttcaaaaaccaacccttgaagttcatgtcaagtgtgttttatagatatatttatcatattatacattgttcat |
1915303 |
T |
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| Q |
110 |
tagttgttgggtgtgtgtcatatatcgccttcatttttcttcagacttgcgtgcatgggatgttatatattccctttcnnnnnnncattattttatgtac |
209 |
Q |
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| T |
1915302 |
tagttgttgggtgtgtgtcatatatcgccttcatttttcttcagacttgcgtgcatgggatgttatatattccctttctttttttcattattttatgtac |
1915203 |
T |
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| Q |
210 |
ttggagatatgttgtaataggtacactat |
238 |
Q |
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| T |
1915202 |
ttggagatatgttgtaataggtacactat |
1915174 |
T |
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