View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_high_3 (Length: 515)
Name: NF3500_high_3
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 10 - 500
Target Start/End: Original strand, 11604125 - 11604606
Alignment:
| Q |
10 |
catcatcaacatgagtcacaaggcgtggatatgcataaaactctttatcttggataaggttcaatttggttctaccttcttgtgtaagaacaaaacgttt |
109 |
Q |
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| T |
11604125 |
catcatcaacatgagtcacaaggcgtggatatgcataaaactctttatcttggataaggttcaatttggttctaccttcttgtgtaagaacaaaacgttt |
11604224 |
T |
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| Q |
110 |
aattttaccaactgaagaagattgttgattggtttggctgttttcatttaatgtgcaaactattttggttggagttttgatatgaggtgtgtagatggca |
209 |
Q |
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| T |
11604225 |
aattttaccaactgaagaagattgttgattggtttggctgttttcatttaatgtgcaaactattttggttggagttttgatatgaggtgtgtagatggca |
11604324 |
T |
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| Q |
210 |
tgtagattggtttgcatttttggagtttggagtagctatttgggtgaaaagtggatatgatacatatgaatgaattaaaattatcaaattaaaaatctaa |
309 |
Q |
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| T |
11604325 |
tgtagattggtttgcattgttggagtt-gga--------ttgggtgaaaagtggatatgatacatatgaatgaattaaaattatcaaattaaaaatctaa |
11604415 |
T |
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| Q |
310 |
ttttgtatactatatgaattgttgggagataagcaatcaatggttgtgagatgatacagaggtttagtagtttttgcagctgaaataaaattaaaggcat |
409 |
Q |
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| T |
11604416 |
ttttgtatactatatgaattgttgggggataagcaatcaatggttgtgagatgatatagaggtttagtagtttttgtagctgaaatgaaattaaaggcat |
11604515 |
T |
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| Q |
410 |
cttttggttcggccacaatgtatcgtgattcggtcataatgtatggtgagtaatgatatttgtataattattttttgttatttattgaaac |
500 |
Q |
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| T |
11604516 |
cttttggttcggccacaatgtatcgtgattcggtcataatgtatggtgagtaatgatatttgtataattattttttgttatttattgaaac |
11604606 |
T |
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