View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_high_7 (Length: 372)
Name: NF3500_high_7
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 4721663 - 4721317
Alignment:
| Q |
17 |
cataattccttatctatatgaatacatcatatctaatgttaatattttgtaattga--tcattatatcgactttgatactaataccttatcttagatttt |
114 |
Q |
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| T |
4721663 |
cataattccttatctagatgaatacatcatatctaatgttaatattttgtaattgacatcactacatcgactttgatactaataccttatcttagatttt |
4721564 |
T |
|
| Q |
115 |
ggtaattcatacgttccttttagcagagaagatgcctatctgttttgcttgtccgtgcgtatttgtatatatgttgaatttggtaggtggttatgttggg |
214 |
Q |
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| T |
4721563 |
ggtaattcatacattccttttagcagagaagatgcctatctgttttgcttgtctgtgcgtatttgtatatatgttgaatatggtaggtgtttatgttggg |
4721464 |
T |
|
| Q |
215 |
ttatcgccatgatattccatttgtcgtcatggtgcatactctttaatctggatcttctcatgttgtgccattttattattcgacatttacttttgatttg |
314 |
Q |
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| T |
4721463 |
ttatcgccatgatattccatttgtcgtcatggtgcatactctttaatctggatcttctcatgttgtgccattttattattcgacatttacttttgatttg |
4721364 |
T |
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| Q |
315 |
ttcgttgaagattgaagaaacatgctggtggttctctggtgatgatg |
361 |
Q |
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| T |
4721363 |
ttagttgaagattgaagaaacatgctggtggttctctggtgaggatg |
4721317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 54923629 - 54923478
Alignment:
| Q |
19 |
taattccttatctatatgaatacatcatatctaatgttaatattttgtaattga--tcattatatcgactttgatactaataccttatcttagattttgg |
116 |
Q |
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||||||||||| || ||||||| || || ||||||||||||| | ||||| || |||| | |||| ||||||||| ||| |||||||| ||||||||| |
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| T |
54923629 |
taattccttatataaatgaatatattgtagctaatgttaatatatggtaatagacatcataacatcggctttgataccaattccttatctaagattttgg |
54923530 |
T |
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| Q |
117 |
ta---attcatacgttccttttagcagagaagatgcctatctgttttgcttg |
165 |
Q |
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|| ||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
54923529 |
tagtaattcatattttccttttagcagagaagatacctatctgttttgcttg |
54923478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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