View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_1 (Length: 717)
Name: NF3500_low_1
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_1 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 654; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 19 - 712
Target Start/End: Original strand, 13202 - 13895
Alignment:
| Q |
19 |
tgttttagctggaaatgatatatctgaaatccaacatgttaaatgttttcttaatgatcgttttaaaatcaaagaccttggttccttacgatattttcta |
118 |
Q |
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| T |
13202 |
tgttttagctggaaatgatatatctgaaatccaacatgttaaatgttttcttattgatcgttttaaaatcaaagaccttggttccttacgatattttcta |
13301 |
T |
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| Q |
119 |
ggtcttgaggttgctagaagcaaacaaggcattttacttaatcaaagaaaatatactcttgaacttttagaggatagtggtaatcttgctgtaaaatcca |
218 |
Q |
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| T |
13302 |
ggtcttgaggttgctagaagcaaacaaggcattttacttaatcaaagaaaatatactcttgaacttttagaggatagtggtaatcttgctgtaaaatcca |
13401 |
T |
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| Q |
219 |
ctcttactccttatgatatttctttaaaactccacaattctgattcgtccctttacaatgatgaaactaaatatagaagactcataggcaaacttattta |
318 |
Q |
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| T |
13402 |
ctcttactccttatgatatttctttaaaactccacaattctgattcgcccctttacaatgatgaaactcaatatagaagactcataggcaaacttattta |
13501 |
T |
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| Q |
319 |
tttaactactactcgtcctgatatatcctttgttattcaacaattaagccaatttgtttcgaaacctcagcaagttcactatcaggctgctattagagtt |
418 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13502 |
tttaactactactcgtcctgatatatcctttgctgttcaacaattaagccaatttgtttcgaaacctcagcaagttcactatcaggctgctattagagtt |
13601 |
T |
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| Q |
419 |
ttacaatatctgaaaactgcccctaccaaaggattattctactcagcaacttctaatttgaaactttctggttttgcagattctgattgggcaacttgtc |
518 |
Q |
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| T |
13602 |
ttacaatatctgaaaactgcccctgccaaaggattattctactcagcaacttctaatttgaaactttctagttttgcagattctgattgggcaacttgtc |
13701 |
T |
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| Q |
519 |
ctacaaccaggaaatctgtaacgggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagcagtcaatcgtctccaaatcaagctc |
618 |
Q |
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| T |
13702 |
ctacaaccaggaaatctgtaacgggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagcagtcgatcgtctccaaatcaagctc |
13801 |
T |
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| Q |
619 |
agaagctgaatatcgtgcattagcaagccttacatgtgaactgcaatggctaatgtacctctttaaagatctgcacctctctttctctgctcct |
712 |
Q |
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| T |
13802 |
agaagctgaatatcgcgcattagcaagccttacatgtgaactgcaatggctaatgtacctctttaaagatctgcacctctctttctcttctcct |
13895 |
T |
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