View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_10 (Length: 361)
Name: NF3500_low_10
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 361
Target Start/End: Complemental strand, 31727535 - 31727190
Alignment:
| Q |
16 |
caccacaaaattaagataatcattggatgtttagagtttaaacagctgataattctttgttgaatcttcttctctcacccaaaccaattttcttgataga |
115 |
Q |
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| T |
31727535 |
caccacaaaattaagataatcattggatgtttagagtttaaacagctgataattctttgttgaatcttcttctctcacccaaaccaattttcttgataga |
31727436 |
T |
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| Q |
116 |
gaccgagagagacatatgtttatatcaaattacgaatcactcataaagatacagacattaaacacaacactgatatgtcgagactaataataactctaga |
215 |
Q |
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| T |
31727435 |
gaccgagagagacatatgtttatatcaaattacgaatcactcataaagatacagacaccaaatacaacactgatatgtcgagactaataataactctaga |
31727336 |
T |
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| Q |
216 |
aacttaatgtaatcacgtgtcggtgtcaagccattgtcggacacttgcacatttggatgcgtcagacatcgaacacgtcttctatcagaagtgtcgtgct |
315 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31727335 |
aacttaatgtaatcacatgtcggtgtcaagccattgtcggacacttgcacatttggatgcgtcaaacatcgaacacgtcttctatcagaagtgtcgtgct |
31727236 |
T |
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| Q |
316 |
acgtagtatcagaaaaactaattactccaaggatttttaatgaatg |
361 |
Q |
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| T |
31727235 |
acgtggtatcagaaaaactaattactccaaggatttttaatgaatg |
31727190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 31720351 - 31720323
Alignment:
| Q |
90 |
tcacccaaaccaattttcttgatagagac |
118 |
Q |
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| T |
31720351 |
tcacccaaaccaattttcttgatagagac |
31720323 |
T |
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