View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_11 (Length: 350)
Name: NF3500_low_11
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 13150091 - 13150430
Alignment:
| Q |
1 |
agtttcaagtttggttaaataatgctatgataagttactatatgtactaaatatatattgtgtaccaatgctcactctaacatctactttctaacactat |
100 |
Q |
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| T |
13150091 |
agtttcaagtttggttaaataatgctatgataagttactatatgtactaaatatatattgtgtaccaatgctcactctaacatctactttctaacactat |
13150190 |
T |
|
| Q |
101 |
ct----tactcgatgaaatatatgtgggtaccacnnnnnnngtatcgaagtccctcgtcgttaattatttccgcaatcacatagtcgaaacattgattga |
196 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13150191 |
ctctcttactcgatgaaatatatgtgggtaccactttttttgtatcgaagtcccttgtcgttaattatttccgcaatcacatagtcgaaacattgattga |
13150290 |
T |
|
| Q |
197 |
tggttagtctatcaagatcggacaatccaatttcaaacttgatattttaaactccaaaataaaaattacaagctacatttctttgaatcgttcgatctta |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||||||| |
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| T |
13150291 |
tggttagtctatcaagatcggacaatccaatttcaaacttgatattttaaacttcaaaataaaaattacaaactacatttctttagattgttcgatctta |
13150390 |
T |
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| Q |
297 |
gtcgaatgatcatcgatattttttaattccactattatat |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
13150391 |
gtcgaatgatcatcgatattttttaattccactattatat |
13150430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 29007896 - 29007794
Alignment:
| Q |
1 |
agtttcaagtttggttaaataatgctatgataagttactatatgtactaaatatatattgtgtaccaatgctcactctaacatctactttctaacactat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29007896 |
agtttcaagtttggttaaataatgctatgataagtaattatatgtactaaatatatattgtgtaccaatgctcactctaacacctactttctaacactat |
29007797 |
T |
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| Q |
101 |
ctt |
103 |
Q |
| |
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||| |
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| T |
29007796 |
ctt |
29007794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 29007726 - 29007667
Alignment:
| Q |
204 |
tctatcaagatcggacaatccaatttcaaacttgatattttaaactccaaaataaaaatta |
264 |
Q |
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||||||||| ||||||||| |||||||| ||| |||||| ||||||| ||||||||||||| |
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| T |
29007726 |
tctatcaag-tcggacaattcaatttcatactcgatattataaactctaaaataaaaatta |
29007667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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