View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_13 (Length: 309)
Name: NF3500_low_13
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 32188687 - 32188971
Alignment:
| Q |
20 |
ggcagaatatttgacatggccactaccttcctttctagttgacaatcaataattcctatacactacttaatttattatattcacatagaatcatacagta |
119 |
Q |
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| T |
32188687 |
ggcagaatatttgacatggccactaccttcctttctagttgacaatcaataattcctatacactacttaatttattatattcacatagaatcatacagta |
32188786 |
T |
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| Q |
120 |
gcgcacggatgaggttgacctagttaataagtagttaatttctactctataaagatataagtttaactatgattaagagttctatgttagataaggtaaa |
219 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||| |||| |||||||||| |
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| T |
32188787 |
gcgcacggatgaggttgatctagttaataagtagttgatttctactctgtaaagatatgagtttaactctgattaagagttctacgttaaataaggtaaa |
32188886 |
T |
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| Q |
220 |
acctaaaaatatatttataagttggggataatactcaccttacaaatttattatataactatgtatgtcaacattctctgctcct |
304 |
Q |
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| T |
32188887 |
atctaaaaatatatttataagttggagataatactcaccttacaaatttattatataactatgtatgtcaacattctctgatcct |
32188971 |
T |
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