View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_18 (Length: 265)
Name: NF3500_low_18
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 33778321 - 33778559
Alignment:
| Q |
11 |
cataggattggttttaaagtggatgagacatagctcttgtcacagttcacccaaaaatagccaccaccaagatcaatggttaggttgattggtacaagtg |
110 |
Q |
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| T |
33778321 |
cataggattggttttaaagtggatgagacatagctcttgtcacagttcacccaaaaatagccaccaccaagatcaatggttaggttgattggtacaagtg |
33778420 |
T |
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| Q |
111 |
gtgttctttgtttgatttgagtagtgtattgtggtgttgaggctgaagtgtctctggttatggggagaactagtgcttttggtctgaaagaggtttgtgc |
210 |
Q |
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| T |
33778421 |
gtgttctttgtttgatttgagtagtgtattgtggtgttgaggctgaagtgtctctggttatggggagaactagtgcttttggtctgaaagaggtttgtgc |
33778520 |
T |
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| Q |
211 |
taaggaggtggagatgaacaaagagaggaatggtaaaag |
249 |
Q |
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| T |
33778521 |
taaggaggtggagatgaacaaagagaggaatggtaaaag |
33778559 |
T |
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