View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_2 (Length: 560)
Name: NF3500_low_2
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 42184974 - 42185497
Alignment:
| Q |
1 |
tggtccactagctgaagttctaaggccaagcaatgttacttccatcagtgatgcaacaaattctaatccatcttcacctctcacaacaacaaatcgtgtc |
100 |
Q |
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| T |
42184974 |
tggtccactagctgaagttctaaggccaagcaatgttacttccatcagtgatgcaacaaattctaatccatcttcacctctcacaacaacaaatcgtgtc |
42185073 |
T |
|
| Q |
101 |
gaatccattggcacttcaggaacaggaatggtatcctctccatctggtgttttgcataataaaacacttgcttcattttctgatagtagtggtaatagca |
200 |
Q |
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| T |
42185074 |
gaatccattggcacttcaggaacaggaatggtatcctctccatctggtgttttgcataataaaacacttgcttcattttctgatagtagtggtaatagca |
42185173 |
T |
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| Q |
201 |
gtccaaatgttgcatcatcaagagctaattctgaaattgccttactcaataagtttaatcatatttcatatgtaaattaattaattagcaccttctgctt |
300 |
Q |
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| T |
42185174 |
gtccaaatgttgcatcatcaagagctaattctgaaattgccttactcaataagtttaatcatatttcatatgtaaattaattaattagcaccttctgatt |
42185273 |
T |
|
| Q |
301 |
ttaagtttcatttaacctaagattattgttctgttctataatgtaatcttattgtgcttgcatatttatcaaaattcaactatgcattatagcctattgt |
400 |
Q |
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| T |
42185274 |
ttaagtttcatttaacctaagattattgttctattctgtaatgtaatcttattgtgcttgcatatttatcaaaattcaactatgcattatagcctattgt |
42185373 |
T |
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| Q |
401 |
tcagtgatgtttgttgttatattatatagtagaagaaaaactgatgaaacaacaagtcaacaactcagtgtttctgtacaaccagtgtttctgttttatg |
500 |
Q |
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| T |
42185374 |
tcagtgatgtttgttgttatattatatagtagaagaaaaactgatgaaacaacaagtca------------------acaaccagtgtttctgttttatg |
42185455 |
T |
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| Q |
501 |
tgaataagactctttgctgtgttgtgttgtgttgtactccat |
542 |
Q |
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| T |
42185456 |
tgaataagactctttgctatgttgtgtcgtgttgtactccat |
42185497 |
T |
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