View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_22 (Length: 253)
Name: NF3500_low_22
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 53 - 243
Target Start/End: Original strand, 39507245 - 39507436
Alignment:
| Q |
53 |
tcagctctttgggcactgtgacaacttttctacttgcttgttttggttatcttgtccattgaataaccatttatgttttgtaaattgtttagggctacaa |
152 |
Q |
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| T |
39507245 |
tcagctcttttggcactgtgacaacttttcaacttgcttgttttgcttatcttgtccactgaataatcatttttgtttctctaattatttagggctacaa |
39507344 |
T |
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| Q |
153 |
tgttctcaaaagacttgctgatgtgattgataaatctgataagaaaactcttgagcaattaagtgggtaagaaattttagc-gtcttttcat |
243 |
Q |
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| T |
39507345 |
tgttctcaaaagacttgctgatgtgattgataagtctgataagaatgctctagagcaattaagcgggtaagaaattttagctgtcttttcat |
39507436 |
T |
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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 8880520 - 8880599
Alignment:
| Q |
148 |
tacaatgttctcaaaagacttgctgatgtgattgataaatctgataagaaaactcttgagcaattaagtgggtaagaaat |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||||| ||| |||||||||| |
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| T |
8880520 |
tacaatgttctcaaaagacttgctgatgtgattgataaatttgataggaaagctctagagcaaataatccggtaagaaat |
8880599 |
T |
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