View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_25 (Length: 248)
Name: NF3500_low_25
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 35042786 - 35043014
Alignment:
| Q |
2 |
tttttaacaaaatgcattagaatttttatgccaacaataagggaagaaagaatggagacaagaggggtcactctccatggtcactgatttcaaaggaaac |
101 |
Q |
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| T |
35042786 |
tttttaacaaaatgcattataatttttatgccaacaataagggaagaaagaatggagacaagaggggtcactctccatggtcactgatttcaaaggaaac |
35042885 |
T |
|
| Q |
102 |
cattgtccttatgcttcctcttctgtccttttcagattccaactcaagaatctgcaaagctagctgttagtacttcaattttcagttaacagatnnnnnn |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35042886 |
cattgtccttatgcttcctcttctgtccttttcagattccaactcaagaatctgcaaagctagctgttagtacttcaattttcagttaacagataaaaaa |
35042985 |
T |
|
| Q |
202 |
nccttcactctccatagcaagcactaacc |
230 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
35042986 |
accttcactctccatagcaagcactaacc |
35043014 |
T |
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