View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_26 (Length: 247)
Name: NF3500_low_26
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 41896146 - 41896375
Alignment:
| Q |
1 |
ttcatttaaaaatttgacaatttgacataagcatagagaaattgagaggacaagagtgccttacaaaatatgatgtgggagcaaaaccaaatccaccaaa |
100 |
Q |
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| T |
41896146 |
ttcatttaaaaatttgacaatttgacataagcatagagaaattgagaggacaagagtgccttacaaaatatgacgtgggagcaaaaccaaatccaccaaa |
41896245 |
T |
|
| Q |
101 |
gaacccaagaagatctccaaagaaaggaaaactcaccccaaataataatgtaaaagctgaaacatatcaacaaattgtagcaacatcaagattttcatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896246 |
gaacccaagaagatctccaaagaaaggaaaactcaccccaaataataatgtaaaagctgaaacatatcaacaaattgtagcaacatcaagattttcatga |
41896345 |
T |
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| Q |
201 |
agaaattaaataatacttctataacttact |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41896346 |
agaaattaaataatacttctataacttact |
41896375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 44 - 174
Target Start/End: Original strand, 41890577 - 41890707
Alignment:
| Q |
44 |
gagaggacaagagtgccttacaaaatatgatgtgggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaat |
143 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| | || ||||| |
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| T |
41890577 |
gagaggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaaagtgactccaaag |
41890676 |
T |
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| Q |
144 |
aataatgtaaaagctgaaacatatcaacaaa |
174 |
Q |
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| T |
41890677 |
aataatgtaaaagctgaaacgtttcaacaaa |
41890707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 22551979 - 22551861
Alignment:
| Q |
55 |
agtgccttacaaaatatgatgtgggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaataataatgtaaa |
154 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || | ||||||| || | |||||| |
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| T |
22551979 |
agtggcttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaaagggaatgtaaccccaataaaaagtgtaaa |
22551880 |
T |
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| Q |
155 |
agctgaaacatatcaacaa |
173 |
Q |
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||||| |||| || ||||| |
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| T |
22551879 |
agctgcaacaaattaacaa |
22551861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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