View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_27 (Length: 247)
Name: NF3500_low_27
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 48654321 - 48654093
Alignment:
| Q |
1 |
tgtgatgtaggaaagaaatgttagaatttgtttttgaaaaaccaaagaaaggaaaaatatgataatgtgagtattataaaaagggtataaatcttagaaa |
100 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
48654321 |
tgtgatgtaggaaataaatgttagaatttgtttt-gaaaaaccaaagagaggaaaaatatgatgatgtgagtattagaaaaagggtataaatcttagaaa |
48654223 |
T |
|
| Q |
101 |
taatgattatatggttgctgaaattcttcctggataaattaataaat-tttaattttattatagtatatatgtgactatattatttcctggagaaaaatg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
48654222 |
taatgattatatggttgctgaaattcttcctggataaattaataaatgtttaattttattatagtatatatgtgactatattatttaccggagaaaaatg |
48654123 |
T |
|
| Q |
200 |
cttgtagtgttatttttagcatatatgtgg |
229 |
Q |
| |
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|||||| ||||||||||||||||||||||| |
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| T |
48654122 |
cttgtattgttatttttagcatatatgtgg |
48654093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 48576605 - 48576666
Alignment:
| Q |
66 |
tgtgagtattataaaaagggtataaatcttagaaataatgattatatggttgctgaaattct |
127 |
Q |
| |
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||||||| |||| |||||| ||||||| |||||||||||||| |||| || |||||||||| |
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| T |
48576605 |
tgtgagttttatgaaaaggatataaatgttagaaataatgatgatatagtacctgaaattct |
48576666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 28267629 - 28267401
Alignment:
| Q |
8 |
taggaaagaaatgttagaatttgtttttgaaaaaccaaagaaaggaaaaatatgataatgtgagtattataaaaagggtataaatcttagaaataatgat |
107 |
Q |
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| T |
28267629 |
taggaaagaaatgttagatttt-tttttgaaaaaccaaagaaaggaaaaatatgataatgtgagtattgtaaaaagggtataaattttagaaataatgat |
28267531 |
T |
|
| Q |
108 |
tatatggttgctgaaattcttcctggataaattaataaat-tttaattttattatagtatatatgtgactatattatttcctggagaaaaatgcttgtag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28267530 |
tatatggttgctgaaattcttcctggataaattaataaatgtttaaatctattatagtatatatgtgactatattatttcctgtagaaaaatgcttgtag |
28267431 |
T |
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| Q |
207 |
tgttatttttagc-atatatgtggctatat |
235 |
Q |
| |
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||||||||||||| |||||||||||||||| |
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| T |
28267430 |
tgttatttttagcaatatatgtggctatat |
28267401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 12774883 - 12774661
Alignment:
| Q |
12 |
aaagaaatgttagaatttgtttttgaaaaaccaaagaaaggaaaaatatgataat-gtgagtattataaaaagggtataaatcttagaaataatgattat |
110 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12774883 |
aaagaaatgttagatttt---tttgaaaaaccaaagaaaggaaaaatatgataattgtgagtattataaaaagggtataaattttagaaataatgattat |
12774787 |
T |
|
| Q |
111 |
atggttgctgaaattcttcctggataaattaataaatt-ttaattttattatagtatatatgtgactatattatttcctggagaaaaatgcttgtagtgt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12774786 |
atggttgctgaaattcttcctggataaattaataaatgcttaaatttatcatagtatatatgtgactatattatttcctggagaaaaatgcttgtagtgt |
12774687 |
T |
|
| Q |
210 |
tatttttagcatatatgtggctatat |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
12774686 |
tatttttagcatatatgtggctatat |
12774661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 18474025 - 18473834
Alignment:
| Q |
1 |
tgtgatgtaggaaagaaatgttagaatttgtttttgaaaaaccaaagaaaggaaaaatatgataatgtgagtattataaaaagggtataaatcttagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18474025 |
tgtgatgtaggaaagaaatgttagaatttgtttttgaaaaaccaaagaaaggaaaaatatgataatgtgagtattataaaaaggatataaatcttagaaa |
18473926 |
T |
|
| Q |
101 |
taatgattatatggttgctgaaattcttcctggataaattaataaattttaattttattatagtatatatgtgactatattatttcctggagaaa |
195 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
18473925 |
taatgattatatggttgctgaaattcttcctggataaattaa-aatgtttaattttattatagtatatatgtgac--tattatttcccggagaaa |
18473834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 33008019 - 33007968
Alignment:
| Q |
163 |
gtatatatgtgactatattatttcctggagaaaaatgcttgtagtgttatttt |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
33008019 |
gtatatatgt-actatattatttcctggagaaaaatacttgtggtgttatttt |
33007968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 13773815 - 13773667
Alignment:
| Q |
93 |
cttagaaataatgattatatggttgctgaaattcttcctggataaattaataaattttaattttattatagtatatatgtgactatattatttcctggag |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13773815 |
cttagaaataatgattatatggttgctgaaattcttcctgaataaattaataaattttaattttattatagtatatatgtgactatattatttcctggag |
13773716 |
T |
|
| Q |
193 |
aaaaatgcttgtagtgttatttttagcatatatgtggctatattttctt |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13773715 |
aaaaatgcttgtagtgttatttttagcatatatgtggctatatattctt |
13773667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 13777192 - 13777096
Alignment:
| Q |
1 |
tgtgatgtaggaaagaaatgttagaatttgtttttgaaaaaccaaagaaaggaaaaatatgataatgtgagtattataaaaagggtataaatcttag |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13777192 |
tgtgatgtaggaaagaaatgttagaatttgtttttgaaaaaccaaagaaaggaaaaatatgataatgtgagtattataaaaagggtataaatcttag |
13777096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 42861091 - 42861198
Alignment:
| Q |
96 |
agaaataatgattatatggttgctgaaattcttcctggataaattaataaat-tttaattttattatagtatatatgtgactatattatttcctggagaa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
42861091 |
agaaataatgattatatggttgctgaaattcttcctggataaattaataaatgtttaattatattatagtatatatgtgactatattatttcccggagaa |
42861190 |
T |
|
| Q |
195 |
aaatgctt |
202 |
Q |
| |
|
|||||||| |
|
|
| T |
42861191 |
aaatgctt |
42861198 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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