View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_29 (Length: 240)
Name: NF3500_low_29
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 43578393 - 43578611
Alignment:
| Q |
18 |
ttcccaaaacaacactgaatcaaccactcaccccatcaagctttcaaccaaagccagaagaaaagctgctcaagaatcccccgttggaattttacnnnnn |
117 |
Q |
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| T |
43578393 |
ttcccaaaacaacactgaatcaaccactcaccccatcaagctttcaaccaaagccagaagaaaagctgctcaagaatcccccgttggaattttacaaaaa |
43578492 |
T |
|
| Q |
118 |
nn-ctcaacaactgttctaaaaccagtgatgttctacaagcactaaacctctacgacgaagcgcgaaaagcgcatgttcccctcaatcttgatcattata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43578493 |
aaactcaacaactgttctaaaaccagtgatgttctacaagcactaaacctctacgatgaagcgcgaaaagcgcatgttcccctcaatcttgatcattata |
43578592 |
T |
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| Q |
217 |
ataaactcttgtacctatg |
235 |
Q |
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||||||||||||||||||| |
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| T |
43578593 |
ataaactcttgtacctatg |
43578611 |
T |
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