View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_30 (Length: 237)
Name: NF3500_low_30
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 13777361 - 13777579
Alignment:
| Q |
3 |
cttcctagccgaactctaaaccacctcaaactcgatacacatcattcctcgctccactaactctcctcgactccaattggccatgacaatggtaagaaaa |
102 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13777361 |
cttcctagccaaactctaaaccacctcaaactcgatacacatcattcctcgctccactaactctcctcgactccaattggccatgacaatggtaagaaaa |
13777460 |
T |
|
| Q |
103 |
catgattctcaaatgtgttgatagctatatggggttccaggaaaatattgaggaaaatgaattataagttgtgaccaagataaaagtcgatgagttggat |
202 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13777461 |
catgattctcaaaagtgttgatagctatatggggttccaggaaaatattgacgaaaatgaattataagttgtgaccaagataaaagtcgatgagttggat |
13777560 |
T |
|
| Q |
203 |
atagatgtcggcatatatg |
221 |
Q |
| |
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||||||||||||||||||| |
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| T |
13777561 |
atagatgtcggcatatatg |
13777579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 10289442 - 10289662
Alignment:
| Q |
3 |
cttcctagccgaactctaaaccacctcaaactcgatacacatcattcctcgctccactaactctcctcgactccaattggccatgacaatggtaagaaaa |
102 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
10289442 |
cttcctagccaaactctaaaccacctcaaactcgatacacatcattcctcgctccactaactctcctcgactccaattggccaagacaacggtaagaaaa |
10289541 |
T |
|
| Q |
103 |
catgattctcaaatgtgttgatagctatatggggttccaggaaaatattgaggaaaatgaattataagttgtgaccaagataaaagtcgatgagttggat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10289542 |
catgattctcaaatgtgttgatagctatatggggttccaggaaaatattgacgaaaatgaattataagttgcgaccaagataaaagtcgatgagttggat |
10289641 |
T |
|
| Q |
203 |
atagatgtcggcatatatgtg |
223 |
Q |
| |
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||||||||||||||||||||| |
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| T |
10289642 |
atagatgtcggcatatatgtg |
10289662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 48654491 - 48654710
Alignment:
| Q |
4 |
ttcctagccgaactctaaaccacctcaaactcgatacacatcattcctcgctccactaactctcctcgactccaattggccatgacaatggtaagaaaac |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
48654491 |
ttcctagccgaactctaaaccacctcaaactcgatacacatcattcctcactccactaactctcctcgactccaattggccaagacaacggtaagaaaac |
48654590 |
T |
|
| Q |
104 |
atgattctcaaatgtgttgatagctatatggggttccaggaaaatattgaggaaaatgaattataagttgtgaccaagataaaagtcgatgagttggata |
203 |
Q |
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|
|||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48654591 |
atgattctcaaatgtgttgatagctatatgaaattcaaggaaaatattgacgaaaatgaattataagttgtgaccaagataaaagtcgatgagttggata |
48654690 |
T |
|
| Q |
204 |
tagatgtcggcatatatgtg |
223 |
Q |
| |
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||||||||| |||||||||| |
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| T |
48654691 |
tagatgtcgacatatatgtg |
48654710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12196826 - 12196860
Alignment:
| Q |
1 |
ttcttcctagccgaactctaaaccacctcaaactc |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
12196826 |
ttcttcctagccgaactctaaaccacctcaaactc |
12196860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32735552 - 32735775
Alignment:
| Q |
1 |
ttcttcctagccgaactctaaaccacctcaaactcgatacacatcattcctcgctccactaactctcctcgactccaattggccatgacaatggtaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
32735552 |
ttcttcctagccgaactctaaaccacctcaaactcgatacacatcattcctcgctccactaactctcctcgactccaattggccaagacaacggtaagaa |
32735651 |
T |
|
| Q |
101 |
aacatgattctcaaatgtgttgatagctatatggggttccagg-aaaatattgaggaaaatgaattataagttgtgaccaagataaaagtcgatgagttg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
32735652 |
aacatgattctcaaatgtgttgatagctatatggggttccaggaaaaatattgaagaaaatgaattataagttgtgaccaagatataagtcgatgggttg |
32735751 |
T |
|
| Q |
200 |
gatatagatgtcggcatatatgtg |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
32735752 |
gatatagatgtcggcatatatgtg |
32735775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22403737 - 22403703
Alignment:
| Q |
1 |
ttcttcctagccgaactctaaaccacctcaaactc |
35 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
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|
| T |
22403737 |
ttcttcctagccgaactctaaaccaccttaaactc |
22403703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 7337345 - 7337566
Alignment:
| Q |
3 |
cttcctagccgaactctaaaccacctcaaactcgatacacatcattcctcgctccactaactctcctcgactccaattggccatgacaatggtaagaaaa |
102 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
7337345 |
cttcctagccaaactctaaaccacctcaaactcgatacacatcattcctcgctccactaactctcctcgactccaattggccaagacaacggtaagaaaa |
7337444 |
T |
|
| Q |
103 |
catgattctcaaatgtgttgatagctatatggggttccagg-aaaatattgaggaaaatgaattataagttgtgaccaagataaaagtcgatgagttgga |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
7337445 |
catgattctcaaatgtgttgatagctatatggggttccaggaaaaatattgaagaaaatgaattataagttgtgaccaagatataagtcgatgggttgga |
7337544 |
T |
|
| Q |
202 |
tatagatgtcggcatatatgtg |
223 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
7337545 |
tatagatgtcggcatatatgtg |
7337566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11968139 - 11968173
Alignment:
| Q |
1 |
ttcttcctagccgaactctaaaccacctcaaactc |
35 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
11968139 |
ttcttcctagccaaactctaaaccacctcaaactc |
11968173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 21264852 - 21265072
Alignment:
| Q |
3 |
cttcctagccgaactctaaaccacctcaaactcgatacacatcattcctcgctccactaactctcctcgactccaattggccatgacaatggtaagaaaa |
102 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
21264852 |
cttcctagccaaactctaaaccacctcaaactcgatacacatcattcctcgctccactaactctcctcgactccaattggccaagacaacgataagaaaa |
21264951 |
T |
|
| Q |
103 |
catgattctcaaatgtgttgatagctatatggggttccaggaaaatattgaggaaaatgaattataagttgtgaccaagataaaagtcgatgagttggat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
21264952 |
catgattctcaaatgtgttgatagctatatgaaattcaaggaaaatattgacgaaaatgaattataagttgagaccaagataaaagtcgatgagttggat |
21265051 |
T |
|
| Q |
203 |
atagatgtcggcatatatgtg |
223 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
21265052 |
atagatgtcggcatatatgtg |
21265072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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