View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_31 (Length: 236)
Name: NF3500_low_31
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 6220602 - 6220411
Alignment:
| Q |
14 |
cagagagaaataataagggtaattaataacagttaaaaatggttgtggtacataatgcataatatatcatgtgttaaatgagacaattcactgaaaatac |
113 |
Q |
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| T |
6220602 |
cagagagaaataataagggt---taataacagttaaaaatggttgtggtacataatgcata-----tcatgtgttaaatgagacaattcactgaaaatac |
6220511 |
T |
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| Q |
114 |
aacttttgccattgacttgtcagcatgtatatggctttattatcctggaactttgccagccctttttctggggtcctcatttgcttcagtccaatatttc |
213 |
Q |
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| T |
6220510 |
aacttttgccattgacttgtcagcatgtatatggctttattatcctggaactttgccagccctttttctggggtcctcatttgcttcagtccaatatttc |
6220411 |
T |
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