View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3500_low_33 (Length: 224)
Name: NF3500_low_33
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_33 |
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| [»] scaffold0180 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: scaffold0180 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22371 - 22594
Alignment:
| Q |
1 |
tttaactcataagaagaaaaaatggattttataatagaattagctgagatcgaatttggttttgaaaaaat-gggttaataatatttttcaaatccttgt |
99 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22371 |
tttaactcataagaagaaaaaatgggttttataatagaattagctgagatcgaatttggttttgaaaaaatggggttaataatatttttcaaatccttgt |
22470 |
T |
|
| Q |
100 |
atattgtctctatgtccaaacatgagattttttaatttatgaggttgaatccggatttagagtaggggttttctagattcaattcttgagttgnnnnnnn |
199 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22471 |
atattgtctctatgtccaaacatgaga-tttttaatttatgaggttgaatccggatttagagtaggggttttctagattcaattcttgagttgttttttt |
22569 |
T |
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| Q |
200 |
ncttccagattgttttattttttag |
224 |
Q |
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||||||||||||||||||||||| |
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| T |
22570 |
ttttccagattgttttattttttag |
22594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 46740386 - 46740161
Alignment:
| Q |
1 |
tttaactcataagaagaaaaaatggattttataatagaattagctgagatcgaatttggttttgaaaaaatgggttaataatatttttcaaatccttgta |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46740386 |
tttaactcataagaagaaaaaatgggttttataatagaattagctgagatcgaatttgattttgaaaaaatgggttaataatatttttcaaatccttgta |
46740287 |
T |
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| Q |
101 |
tattgtctc--tatgtccaaacatgagattttttaatttatgaggttgaatccggatttagagtaggggttttctagattcaattcttgagttgnnnnnn |
198 |
Q |
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| T |
46740286 |
tattgtctctatatgtccaaacatgatattttttaatttatgaggttgaatccggatttagagtaggggttttctagtttcaattcttgagttgtttttt |
46740187 |
T |
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| Q |
199 |
nncttccagattgttttattttttag |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
46740186 |
ttcttccagattgttttattttttag |
46740161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 39412984 - 39413173
Alignment:
| Q |
1 |
tttaactcataagaagaaaaaatggattttataatagaattagctgaga------tcgaatttggttttgaaaaaatgggttaataatatttttcaaatc |
94 |
Q |
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|||||||||||||||| ||||||| ||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
39412984 |
tttaactcataagaagttaaaatggttttcataatagaattagcttagacttagatcgaaattggttttgaaaaaatgggttaataatgtttttcaaatc |
39413083 |
T |
|
| Q |
95 |
cttgtatat---tgtctctatgtc----caaacatgagattttttaatttatgaggttgaatccggatttagagtaggggttttctagattc |
179 |
Q |
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| T |
39413084 |
cttatatatcattgtctctatgtgaatgcaaacatgagattttt-aattcatgaggttgaatccggatttatagt-ggagttttctagattc |
39413173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 18605688 - 18605498
Alignment:
| Q |
1 |
tttaactcataagaagaaaaaatggattttataatagaattagctgaga------tcgaatttggttttgaaaaaatgggttaataatatttttcaaatc |
94 |
Q |
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||||||||||||||| ||||||| ||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
18605688 |
tttaactcataagaaattaaaatggttttcataatagaattagcttagacttagatcgaaattggttttgaaaaaatgggttaataatgtttttcaaatc |
18605589 |
T |
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| Q |
95 |
cttgtatat---tgtctctatgtc----caaacatgagattttttaatttatgaggttgaatccggatttagagtaggggttttctagattc |
179 |
Q |
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||| ||||| ||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||| ||| || ||||||||||||| |
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| T |
18605588 |
cttatatatcattgtctctatgtgaatgcaaacatgagattttt-aattcatgaggttgaatctggatttatagtgggagttttctagattc |
18605498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 32537864 - 32538054
Alignment:
| Q |
1 |
tttaactcataagaagaaaaaatggattttataatagaattagctgaga------tcgaatttggttttgaaaaaatgggttaataatatttttcaaatc |
94 |
Q |
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|||||||||||||||| ||||||| ||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
32537864 |
tttaactcataagaagttaaaatggttttcataatagaattagcttagactttgatcgaaattggttttgaaaaaatgggttaataatgtttttcaaatc |
32537963 |
T |
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| Q |
95 |
cttgtatat---tgtctctatgtc----caaacatgagattttttaatttatgaggttgaatccggatttagagtaggggttttctagattc |
179 |
Q |
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||| ||||| ||||||||||| |||||||||||||||| |||| || ||||||| |||||||||| ||| || ||||||||||||| |
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| T |
32537964 |
cttatatatcattgtctctatgtgaatgcaaacatgagattttt-aattcataaggttgattccggatttatagtgggagttttctagattc |
32538054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 33687145 - 33687333
Alignment:
| Q |
1 |
tttaactcataagaagaaaaaatggattttataatagaattagctgaga------tcgaatttggttttgaaaaaatgggttaataatatttttcaaatc |
94 |
Q |
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|||||||||||||||| ||||||| ||| ||||||||||||||| ||| ||||| |||||||||||||| |||||||||||| ||||||||||| |
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| T |
33687145 |
tttaactcataagaagttaaaatggttttcataatagaattagcttagactttgatcgaaattggttttgaaaaagtgggttaataatgtttttcaaatc |
33687244 |
T |
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| Q |
95 |
cttgtat---attgtctctatg--tccaaacatgagattttttaatttatgaggttgaatccggatttagagtaggggttttctagattc |
179 |
Q |
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||| ||| |||||| || || | ||||||||||| ||||||||| ||||||||||||||| ||||| ||| || ||||||||||||| |
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| T |
33687245 |
cttatatatcattgtcactgtgaatgcaaacatgaga-tttttaattcatgaggttgaatccgaatttatagtgggagttttctagattc |
33687333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 64100 - 63979
Alignment:
| Q |
64 |
gaaaaaatgggtta-ataatatttttcaaatccttgtatat---tgtctctatgtc----caaacatgagattttttaatttatgaggttgaatccggat |
155 |
Q |
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||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||| |||||| |||||||||| |||||||||||||||||| |
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| T |
64100 |
gaaaaaatgggttccataatgtttttaaaatccttgtatatcattgtctctatgtgaatgcaagcatgag-ttttttaattcatgaggttgaatccggat |
64002 |
T |
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| Q |
156 |
ttagagtaggggttttctagatt |
178 |
Q |
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||||||| ||||||||||||||| |
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| T |
64001 |
ttagagttggggttttctagatt |
63979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 42112067 - 42112027
Alignment:
| Q |
141 |
aggttgaatccggatttagagtaggggttttctagattcaa |
181 |
Q |
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|||||||||||| |||| |||| |||||||||||||||||| |
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| T |
42112067 |
aggttgaatccgaattttgagtgggggttttctagattcaa |
42112027 |
T |
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