View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3500_low_5 (Length: 455)
Name: NF3500_low_5
Description: NF3500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3500_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 439
Target Start/End: Complemental strand, 8910557 - 8910135
Alignment:
| Q |
13 |
gaacctgtgcatggccatgtaatgtctgcatatcttttaagaccaaatttgatatatttacttggattgtaataagctattgctaacaattttttgttat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8910557 |
gaacctgtgcatggccatgtaatgtctgcatatcttttaagaccaaatttgatatatttacttggattgtaataagctattgctaacaattttttgttat |
8910458 |
T |
|
| Q |
113 |
tatgtgcagttcaattttgaaggaaattacgatttaataaaatttataaagatgattgggatcatgatatgtatgcaacacttagagctggtccattcat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8910457 |
tatgtgcagttcaattttgaaggaaattacgatttaataaaatttataaagatgattgggatcatgatatgtatgcaacacttagagttggtccattcat |
8910358 |
T |
|
| Q |
213 |
tgaagcataatgaaattatgggtaaggccatattctttgttgattcaaatttttcgtccaaatactaacgagggttgagtcaaacagaaaggttaattat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8910357 |
tgaagcataatgaaattatgggtaaggccatattctttgttgattcaaatttttcgtccaaatactaacgagggttgagtcaaacagaaagg----ttat |
8910262 |
T |
|
| Q |
313 |
tcctccagtgtggcgaaccacgggttgaactttgttgatagagacatatacgttcattgtgtgacgctttcttgagcaagattgactccgtatgagaaga |
412 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8910261 |
tcctccagtgtggcgaaccacgagttgaactttgtcgatagagacatatacgttcattgtgtgacgctttcttgagcaagattgactccgtatgagaaga |
8910162 |
T |
|
| Q |
413 |
ccaatgagttcatccaaaataagtttc |
439 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
8910161 |
ccaatgagttcatccaaaataagtttc |
8910135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University