View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3501_high_1 (Length: 766)
Name: NF3501_high_1
Description: NF3501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3501_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 7 - 756
Target Start/End: Original strand, 11318291 - 11319034
Alignment:
| Q |
7 |
cagaacctgtgaaaataacacaaagttcattcatcaaatttatctatttctatctatttgattacatcacctaacagttcaagttagatcaagacaatga |
106 |
Q |
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| T |
11318291 |
cagaacctgagaaaataacacaaagttcattcatcaaatttatctatttctatctatttgattacatcacctaacagttcaagttagatcaagacaatga |
11318390 |
T |
|
| Q |
107 |
tcacaatattgtgtggacttatctaatttgataatatcagcatttgagtgaggtaaatttgcttcacatgtctttagagaaattaccaagcgataatata |
206 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11318391 |
tcacaatcttgtgtgaacttatctaatttgataatatcagcatttgagtgaggtaaatttgcttcacatgtctttagagaaattaccaagcgataatata |
11318490 |
T |
|
| Q |
207 |
aatagttgtctgctcaattttgacatagttgagagcaaatggtaagatgtaccttaacatcaaggagttgacaat----nnnnnnnnntcaacattttta |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
11318491 |
aatagttgtctgctcaattttgacatagttgagagcaaatggtaagatgtaccttaacatcaaggtgttgacaataaaaaaaaaaaaatcaacattttta |
11318590 |
T |
|
| Q |
303 |
tctatggacnnnnnnnctgcagccaattgaagctcagcttgattgaaaacaacgaggaaatgtaatgtacaaaattctacaagtttcatgagaataggag |
402 |
Q |
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| T |
11318591 |
tctatggacaaaaaaactgcagccaattgaagctcagcttgattgaaaacaacgaggaaatgtattgtacaaaattctacaagtttca-------acgag |
11318683 |
T |
|
| Q |
403 |
cagaattatacagacagttggatgtgtatgccccatcttcacaggtagaaaaaatctaaatatttcgtgactatcatatgaaaaaacctaaatgtggctt |
502 |
Q |
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| | | ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11318684 |
gaaa---ctgcagacagttggatgtgtatgccccaccttcacaggtagaaaaaatataaatatttcgtgactatcatataaaaaaacctaaatgtggctt |
11318780 |
T |
|
| Q |
503 |
cattcctaaataatatatgaaatattataaaaagtatcatcaagaacattcatattctaaaatgcattaatcaataccataccnnnnnnnnnnnnnnnnn |
602 |
Q |
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| T |
11318781 |
cattcctaaataatatatgaaatattataaaaagtatcatcaagaacattcatattctaaaatgcattaatcaataccataccaaaaagaaaaattaaaa |
11318880 |
T |
|
| Q |
603 |
nnnnnttgaacaggtaagtacctgattgtagtacgtaggcatccaggttaatagaataaatgtcccccaattgtggcagaagtgagagactattaaagcc |
702 |
Q |
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| T |
11318881 |
taaaattgaacaggtaagtacctgattgtagtacgtaggcatccaggttaatagaataaatgtcccccaattgtggcagaagtgagagactattaaagcc |
11318980 |
T |
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| Q |
703 |
cagacaggtgcttttgataaaatcaatttccaaggaataactgtcacaggttct |
756 |
Q |
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| T |
11318981 |
cagacaggtgcttttgataaaatcaatttccaaggaataactgtcacaggttct |
11319034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 622 - 740
Target Start/End: Complemental strand, 29402399 - 29402281
Alignment:
| Q |
622 |
acctgattgtagtacgtaggcatccaggttaatagaataaatgtcccccaattgtggcagaagtgagagactattaaagcccagacaggtgcttttgata |
721 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||| ||| | |||||| || ||||||||||||| |
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| T |
29402399 |
acctgattgtagtaagtaggcatccatgttaatagaataaatgttccccagttgtggcagaaatgagagattataagagcccatactggtgcttttgata |
29402300 |
T |
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| Q |
722 |
aaatcaatttccaaggaat |
740 |
Q |
| |
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|||| |||||||||||||| |
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| T |
29402299 |
aaattaatttccaaggaat |
29402281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 622 - 740
Target Start/End: Original strand, 10159443 - 10159561
Alignment:
| Q |
622 |
acctgattgtagtacgtaggcatccaggttaatagaataaatgtcccccaattgtggcagaagtgagagactattaaagcccagacaggtgcttttgata |
721 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||| ||| | |||||| || ||||||||||||| |
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| T |
10159443 |
acctgattgtagtaagtaggcatccatgttaatagaataaatgttccccagttgtggcagaaatgagagattataagagcccatactggtgcttttgata |
10159542 |
T |
|
| Q |
722 |
aaatcaatttccaaggaat |
740 |
Q |
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|||| |||||||||||||| |
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| T |
10159543 |
aaattaatttccaaggaat |
10159561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 15145711 - 15145764
Alignment:
| Q |
28 |
aaagttcattcatcaaatttatctatttctatctatttgattacatcacctaac |
81 |
Q |
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| T |
15145711 |
aaagttcattcatcaaatttatatatttctatctatttgatcacatcacctaac |
15145764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 22622857 - 22622814
Alignment:
| Q |
28 |
aaagttcattcatcaaatttatctatttctatctatttgattac |
71 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
22622857 |
aaagttcattcatcaaatttatatgtttctatctatttgattac |
22622814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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