View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3501_low_2 (Length: 316)

Name: NF3501_low_2
Description: NF3501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3501_low_2
NF3501_low_2
[»] chr1 (3 HSPs)
chr1 (16-300)||(12611187-12611472)
chr1 (53-301)||(15884576-15884824)
chr1 (53-296)||(12638224-12638467)
[»] scaffold0059 (1 HSPs)
scaffold0059 (54-300)||(63358-63604)
[»] chr3 (12 HSPs)
chr3 (137-243)||(23040334-23040440)
chr3 (138-247)||(23018544-23018653)
chr3 (47-195)||(22987384-22987532)
chr3 (137-243)||(23037457-23037563)
chr3 (216-264)||(22947821-22947869)
chr3 (135-247)||(23025558-23025670)
chr3 (135-247)||(23141555-23141667)
chr3 (222-273)||(22913972-22914023)
chr3 (222-273)||(22934068-22934119)
chr3 (137-199)||(23147209-23147271)
chr3 (222-262)||(22939390-22939430)
chr3 (216-264)||(22973659-22973707)
[»] chr6 (2 HSPs)
chr6 (137-243)||(21781224-21781330)
chr6 (134-191)||(14307649-14307706)
[»] scaffold0554 (1 HSPs)
scaffold0554 (138-193)||(5173-5228)
[»] chr8 (1 HSPs)
chr8 (134-191)||(23611536-23611593)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 12611187 - 12611472
Alignment:
Q  16 ctgtgtaatcatatgacaatatttctatagttagaagtttaggcctagatgcaaatatgacatcatgggttttaagtacctccctagcatactctggtga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  12611187 ctgtgtaatcatatgacaatatttctatagttagaagtttaggcctagatgcaaatattacatcatgggttttaagtacctccctagcatactctggcga 12611286  T
Q  116 ggaaacaacaattgcagtgatctctccaagttgtaggtgcatcaagggtccataaattttggccaagtctcttaattttcgatgcggtgtagaagttact 215  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||    
T  12611287 tgaaacaacaattgcagagatctctccaagttgtaggtgcatcaagggtccataaattttcgccaagtctcttaattttcgatgtggtgtagaagtaact 12611386  T
Q  216 agatgatgtatgtttcctataataggtagcttccatggacctggtggtagctttggagctgaccttttttcc-ttgagattcttcc 300  Q
    | |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  12611387 aaatgatgtatgcttcctataataggtaacttccatggtcctggtggtagctttggagctgaccttttttcctttgagattcttcc 12611472  T

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Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 53 - 301
Target Start/End: Complemental strand, 15884824 - 15884576
Alignment:
Q  53 tttaggcctagatgcaaatatgacatcatgggttttaagtacctccctagcatactctggtgaggaaacaacaattgcagtgatctctccaagttgtagg 152  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||  ||||||||| ||||||||     
T  15884824 tttaggcctagatgcaaatattacatcatgggttttaagtacctccttagcatagtctggtgaggaaacaacaatggcaaagatctctcctagttgtagt 15884725  T
Q  153 tgcatcaagggtccataaattttggccaagtctcttaattttcgatgcggtgtagaagttactagatgatgtatgtttcctataataggtagcttccatg 252  Q
    ||||| ||||||||||  |||||||||||||||||||||||| |||| |||||||| || |||||||||||||||| |||||||||||||||||||||||    
T  15884724 tgcattaagggtccatgtattttggccaagtctcttaatttttgatgtggtgtagaggtaactagatgatgtatgtgtcctataataggtagcttccatg 15884625  T
Q  253 gacctggtggtagctttggagctgaccttttttccttgagattcttcct 301  Q
    | ||||| ||||| ||||||| ||| | ||||| |||||||||||||||    
T  15884624 gtcctgggggtaggtttggagatgagccttttttcttgagattcttcct 15884576  T

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Target: chr1; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 53 - 296
Target Start/End: Original strand, 12638224 - 12638467
Alignment:
Q  53 tttaggcctagatgcaaatatgacatcatgggttttaagtacctccctagcatactctggtgaggaaacaacaattgcagtgatctctccaagttgtagg 152  Q
    ||||||| ||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  12638224 tttaggcttagatgcaaatatgatatcatgagttttcattacctccctagcatactctggtgaggaaacaacaattgcagagatctctccaagttgtaag 12638323  T
Q  153 tgcatcaagggtccataaattttggccaagtctcttaattttcgatgcggtgtagaagttactagatgatgtatgtttcctataataggtagcttccatg 252  Q
    ||||||||||||||||| | ||||||||| |||||||||||| |||| |||||||| |  || ||||| ||||||| |||||||||||| ||||||||||    
T  12638324 tgcatcaagggtccatacactttggccaaatctcttaatttttgatgtggtgtagaggaaacaagatggtgtatgtgtcctataataggcagcttccatg 12638423  T
Q  253 gacctggtggtagctttggagctgaccttttttccttgagattc 296  Q
    | ||||| ||||| ||||||||||| ||||||| ||| ||||||    
T  12638424 gtcctgggggtagatttggagctgaactttttttcttaagattc 12638467  T

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Target: scaffold0059 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 54 - 300
Target Start/End: Original strand, 63358 - 63604
Alignment:
Q  54 ttaggcctagatgcaaatatgacatcatgggttttaagtacctccctagcatactctggtgaggaaacaacaattgcagtgatctctccaagttgtaggt 153  Q
    |||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  63358 ttaggcctagatgcaaatttgacatcatgggttttaaatatctccctagcatactctggtgaggaaacaacaattgcagagatctctccaagttgtagct 63457  T
Q  154 gcatcaagggtccataaattttggccaagtctcttaattttcgatgcggtgtagaagttactagatgatgtatgtttcctataataggtagcttccatgg 253  Q
    ||||||||| |||||   ||||||||||||| || ||||||||||| || ||||| || | |||||||||||||| ||| ||||||||||||||||||||    
T  63458 gcatcaaggatccatgtgttttggccaagtcactcaattttcgatgtggggtagatgtaagtagatgatgtatgtgtccaataataggtagcttccatgg 63557  T
Q  254 acctggtggtagctttggagct-gaccttttttccttgagattcttcc 300  Q
     ||||| ||||| ||||||||| || ||||||| | ||||||||||||    
T  63558 tcctggaggtaggtttggagctggagctttttt-catgagattcttcc 63604  T

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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 23040334 - 23040440
Alignment:
Q  137 ctctccaagttgtaggtgcatcaagggtccataaattttggccaagtctcttaattttcgatgcggtgtagaagttactagatgatgtatgtttcctata 236  Q
    |||||||||||| || ||||||| |||||||||  |||||||||||||||||| ||||||||| |||  ||| ||||  ||||  ||||| |||||||||    
T  23040334 ctctccaagttgaagatgcatcaggggtccatattttttggccaagtctcttagttttcgatggggttgagaggttaacagattgtgtatatttcctata 23040433  T
Q  237 ataggta 243  Q
    |||||||    
T  23040434 ataggta 23040440  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 23018544 - 23018653
Alignment:
Q  138 tctccaagttgtaggtgcatcaagggtccataaattttggccaagtctcttaattttcgatgcggtgtagaagttactagatgatgtatgtttcctataa 237  Q
    ||||||||||| || |||||||||||||||||  ||||||||||||| |||||||||| ||| |||  |||  |||  ||||  ||||| ||||||||||    
T  23018544 tctccaagttgaagatgcatcaagggtccatattttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataa 23018643  T
Q  238 taggtagctt 247  Q
    ||||||||||    
T  23018644 taggtagctt 23018653  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 195
Target Start/End: Original strand, 22987384 - 22987532
Alignment:
Q  47 tagaagtttaggcctagatgcaaatatgacatcatgggttttaagtacctccctagcatactctggtgaggaaacaacaattgcagtgatctctccaagt 146  Q
    |||||| | |||||| ||||||||||| | |||||| ||||| |  |||||||| |||   ||||||||||||||||||||   |   ||||| ||||||    
T  22987384 tagaagatgaggccttgatgcaaatataatatcatgagttttcaagacctcccttgcaacttctggtgaggaaacaacaatgaaaaatatctcaccaagt 22987483  T
Q  147 tgtaggtgcatcaagggtccataaattttggccaagtctcttaattttc 195  Q
    ||||| |||||||||||||||||  |||| || || |||||||||||||    
T  22987484 tgtagatgcatcaagggtccatatttttttgctaaatctcttaattttc 22987532  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 23037457 - 23037563
Alignment:
Q  137 ctctccaagttgtaggtgcatcaagggtccataaattttggccaagtctcttaattttcgatgcggtgtagaagttactagatgatgtatgtttcctata 236  Q
    |||||||||||| || |||||||  ||||||||  |||||||||||||||||||||| | ||| |||  |||  |||  ||||  ||||| |||||||||    
T  23037457 ctctccaagttgaagatgcatcactggtccatattttttggccaagtctcttaatttcctatggggttgagagcttaacagattgtgtatatttcctata 23037556  T
Q  237 ataggta 243  Q
    |||||||    
T  23037557 ataggta 23037563  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 22947821 - 22947869
Alignment:
Q  216 agatgatgtatgtttcctataataggtagcttccatggacctggtggta 264  Q
    |||| ||||||||||||||| || |||||||||||||| ||||||||||    
T  22947821 agattatgtatgtttcctatgattggtagcttccatggccctggtggta 22947869  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 23025558 - 23025670
Alignment:
Q  135 atctctccaagttgtaggtgcatcaagggtccataaattttggccaagtctcttaattttcgatgcggtgtagaagttactagatgatgtatgtttccta 234  Q
    |||||||||||||| || |||||||||||||||||   | | |||||||||| || ||||||||| |||  |||  |||  ||||  ||||| |||||||    
T  23025558 atctctccaagttggagatgcatcaagggtccatattctcttgccaagtctcgtagttttcgatgtggttgagagcttaacagattgtgtatatttccta 23025657  T
Q  235 taataggtagctt 247  Q
    |||| ||||||||    
T  23025658 taattggtagctt 23025670  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 23141555 - 23141667
Alignment:
Q  135 atctctccaagttgtaggtgcatcaagggtccataaattttggccaagtctcttaattttcgatgcggtgtagaagttactagatgatgtatgtttccta 234  Q
    |||||||||||||| || |||||||||||||||||  || | ||||| ||||||| ||||  ||| |||  |||| |||  ||||  ||||  |||||||    
T  23141555 atctctccaagttgaagatgcatcaagggtccatattttctagccaaatctcttagttttttatgtggttgagaacttaacagattgtgtaaatttccta 23141654  T
Q  235 taataggtagctt 247  Q
    |||||||||||||    
T  23141655 taataggtagctt 23141667  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 22914023 - 22913972
Alignment:
Q  222 tgtatgtttcctataataggtagcttccatggacctggtggtagctttggag 273  Q
    |||||||||||||||||||||| | || |||||||||||||||  |||||||    
T  22914023 tgtatgtttcctataataggtaacatcaatggacctggtggtaaatttggag 22913972  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 22934068 - 22934119
Alignment:
Q  222 tgtatgtttcctataataggtagcttccatggacctggtggtagctttggag 273  Q
    |||||||||||||||| ||||| |||| |||||||||||||||  |||||||    
T  22934068 tgtatgtttcctataaaaggtaacttcaatggacctggtggtaaatttggag 22934119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 23147209 - 23147271
Alignment:
Q  137 ctctccaagttgtaggtgcatcaagggtccataaattttggccaagtctcttaattttcgatg 199  Q
    |||||||||||| || |||||||  ||||||||  |||| |||||||||||||||||| ||||    
T  23147209 ctctccaagttgaagatgcatcactggtccatattttttcgccaagtctcttaatttttgatg 23147271  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 22939430 - 22939390
Alignment:
Q  222 tgtatgtttcctataataggtagcttccatggacctggtgg 262  Q
    |||||||||||||| ||||||| |||| |||||||||||||    
T  22939430 tgtatgtttcctatgataggtaacttcaatggacctggtgg 22939390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 22973659 - 22973707
Alignment:
Q  216 agatgatgtatgtttcctataataggtagcttccatggacctggtggta 264  Q
    |||| |||||||||||| || || |||||||||||||| ||||||||||    
T  22973659 agattatgtatgtttccaatgattggtagcttccatggccctggtggta 22973707  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 21781224 - 21781330
Alignment:
Q  137 ctctccaagttgtaggtgcatcaagggtccataaattttggccaagtctcttaattttcgatgcggtgtagaagttactagatgatgtatgtttcctata 236  Q
    |||||||||||| || |||||||  ||||||||  |||||||||||||||||||| ||||||  |||  |||  |||  ||||  ||||| |||||||||    
T  21781224 ctctccaagttgaagatgcatcactggtccatattttttggccaagtctcttaatcttcgattgggttgagagcttaacagattgtgtatatttcctata 21781323  T
Q  237 ataggta 243  Q
    |||||||    
T  21781324 ataggta 21781330  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 14307649 - 14307706
Alignment:
Q  134 gatctctccaagttgtaggtgcatcaagggtccataaattttggccaagtctcttaat 191  Q
    |||||| |||||||| || |||||||||||||||||  ||||||| || |||||||||    
T  14307649 gatctcaccaagttgaagatgcatcaagggtccatattttttggctaaatctcttaat 14307706  T

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Target: scaffold0554 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 5228 - 5173
Alignment:
Q  138 tctccaagttgtaggtgcatcaagggtccataaattttggccaagtctcttaattt 193  Q
    ||||||||||| || ||||||| |||||||||  ||||||||||||| ||||||||    
T  5228 tctccaagttgaagatgcatcacgggtccatattttttggccaagtcacttaattt 5173  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 23611536 - 23611593
Alignment:
Q  134 gatctctccaagttgtaggtgcatcaagggtccataaattttggccaagtctcttaat 191  Q
    |||||| |||||||| || |||||||||||||||||  ||||||| || |||||||||    
T  23611536 gatctcaccaagttgaagatgcatcaagggtccatattttttggctaaatctcttaat 23611593  T

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