View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3501_low_3 (Length: 255)
Name: NF3501_low_3
Description: NF3501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3501_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 45270914 - 45270664
Alignment:
| Q |
3 |
ttttattttatttaattaattgtgtaccttatgaatgaagagagagtagatgtgaaatagtagcatcactctcaaaattcatttatgaagaaaacattaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
45270914 |
ttttattttatttaattaattgtgtaccttatgaatgaagagagagtagatgtgaaatagtagcatcactctcaaaattcatttttgaaaaaaacattaa |
45270815 |
T |
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| Q |
103 |
ctcacattgaaaagatatatat------------------atagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgc |
184 |
Q |
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| T |
45270814 |
ctcacattgaaaagatatatatatagacacatacatatatatagccggtgttatagaagttactaattaattgatcatccatgcatgcagccaacaccgc |
45270715 |
T |
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| Q |
185 |
aatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgc |
235 |
Q |
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| T |
45270714 |
aatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgc |
45270664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 45282687 - 45282435
Alignment:
| Q |
1 |
ttttttattttatttaattaattgtgtaccttatgaatgaagagagagtagatgtgaaatagtagcatcactctcaaaattcatttatgaagaaaacatt |
100 |
Q |
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||||||||||||||||||||||| | ||| ||||||||||||| |||||| ||| |||| ||| |||||||||||||||||||||| |||||||||||| |
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| T |
45282687 |
ttttttattttatttaattaattatttac-ttatgaatgaagaaagagtatatgagaaaaagtggcatcactctcaaaattcatttttgaagaaaacat- |
45282590 |
T |
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| Q |
101 |
aactcacattgaaaagatata---------------------tatatagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaac |
179 |
Q |
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|||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||| ||||||| ||||||||||| |
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| T |
45282589 |
aactaacattgaaaagatatagatacacatataacattgacatatatagccaatgtgatcgaaattactaattaattgattatccatgaatgcagccaac |
45282490 |
T |
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| Q |
180 |
accgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctg |
234 |
Q |
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| T |
45282489 |
accgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctg |
45282435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 45274445 - 45274192
Alignment:
| Q |
1 |
ttttttattttatttaattaattgtgtaccttatgaatgaagagagagtagatgtgaaatagtagcatcactctcaaaattcatttatgaagaaaacatt |
100 |
Q |
| |
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||||||||||||||| ||||||||| |||||||||| |||||| |||||| || |||| ||||||||||||||||||||| |||| |||||||||||| |
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| T |
45274445 |
ttttttattttatttgattaattgtataccttatgattgaagaaagagtatataagaaaaagtagcatcactctcaaaatttatttttgaagaaaacat- |
45274347 |
T |
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| Q |
101 |
aactcacattgaaaaga------------tata---------tatatagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaac |
179 |
Q |
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||||| ||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||| |
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| T |
45274346 |
aactcgcattgaaaagagaaatatatacatataacattgacatatatagccagtgtgatcgaaattactaattaattgattatccatgcgtgcagccaac |
45274247 |
T |
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| Q |
180 |
accgcaatggggttcattggaaaggcaatgacatttgagaacacagccggtcctg |
234 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274246 |
accgcaatagggttcattggaaaggcaatgacatttgagaacacagccggtcctg |
45274192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 125 - 237
Target Start/End: Complemental strand, 45293884 - 45293772
Alignment:
| Q |
125 |
atagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacaca |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45293884 |
atagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaaggcaatgacatttgagaacaca |
45293785 |
T |
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| Q |
225 |
gccggtcctgctg |
237 |
Q |
| |
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||||||||||||| |
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| T |
45293784 |
gccggtcctgctg |
45293772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 125 - 237
Target Start/End: Complemental strand, 45302844 - 45302732
Alignment:
| Q |
125 |
atagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaacaca |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45302844 |
atagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaaggcaatgacatttgagaacaca |
45302745 |
T |
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| Q |
225 |
gccggtcctgctg |
237 |
Q |
| |
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||||||||||||| |
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| T |
45302744 |
gccggtcctgctg |
45302732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 45294075 - 45293948
Alignment:
| Q |
1 |
ttttttattttatttaattaattgtgtaccttatgaatgaagagagagta--gatgtgaaatagtagcatcactctcaaaattcatttatgaagaaaaca |
98 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| || ||| |||| ||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
45294075 |
ttttttattttatttaataaattgtgtaccttatgaatgaagaaagggtaatgatgagaaatagtaacatcactctcaaaattcatttttgaagaaaaca |
45293976 |
T |
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| Q |
99 |
ttaactcacattgaaaagatatatatata |
127 |
Q |
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||||||||||||||||||| |||||||| |
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| T |
45293975 |
-taactcacattgaaaagatttatatata |
45293948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 45303035 - 45302908
Alignment:
| Q |
1 |
ttttttattttatttaattaattgtgtaccttatgaatgaagagagagta--gatgtgaaatagtagcatcactctcaaaattcatttatgaagaaaaca |
98 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||| || ||| |||| ||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
45303035 |
ttttttattttatttaataaattgtgtaccttatgaatgaagaaagggtaatgatgagaaatagtaacatcactctcaaaattcatttttgaagaaaaca |
45302936 |
T |
|
| Q |
99 |
ttaactcacattgaaaagatatatatata |
127 |
Q |
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||||||||||||||||||| |||||||| |
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| T |
45302935 |
-taactcacattgaaaagatttatatata |
45302908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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