View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3502_high_10 (Length: 242)
Name: NF3502_high_10
Description: NF3502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3502_high_10 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 3737460 - 3737237
Alignment:
| Q |
19 |
ggtctgatatattctcacccttacatacaaccttcaaactatttgatttcttgtcaaataaacttctgtcatcttttagatcctaaagaaactattggca |
118 |
Q |
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| T |
3737460 |
ggtctggtctattctcacccttacatacaaccttcaaactatttgatttcttgtcaaataaacttctgtcatcttttagatcctaaagaaactattggca |
3737361 |
T |
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| Q |
119 |
caaattnnnnnnnttgataataataaattaaaattttgatttttagaccaataagcgttgtcacatcttggcccctagagagactatatgggcaggtcat |
218 |
Q |
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| T |
3737360 |
caaattaaaaaaattgataataataaattaaaattttgatttttagaccaataagcgttgtcacatcttggctcctagagagactatatgggcaggtcat |
3737261 |
T |
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| Q |
219 |
ttcaaaaaatttaaactagttttg |
242 |
Q |
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| T |
3737260 |
ttcaaaaatgttaaactagttttg |
3737237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 3740920 - 3740876
Alignment:
| Q |
28 |
tattctcacccttacatacaaccttcaaactatttgatttcttgt |
72 |
Q |
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| T |
3740920 |
tattatcacccttacatataaccttcaaattatttgatttcttgt |
3740876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 3755313 - 3755236
Alignment:
| Q |
132 |
ttgataataataaattaaaattttgatttttagaccaataagcgttgtcacatcttggcccctagagagactatatgg |
209 |
Q |
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| T |
3755313 |
ttgataataataaattgaaatttagattttcggcccaataaactttgtcatgtcttggctcctaaatagactatatgg |
3755236 |
T |
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