View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3502_low_1 (Length: 482)
Name: NF3502_low_1
Description: NF3502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3502_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 9 - 464
Target Start/End: Original strand, 279585 - 280058
Alignment:
| Q |
9 |
agcaaaggtgcaagtgaatacaacaggtcatattctttatttatttattaatggattttttacgggtacacaacatggt------------------ttt |
90 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
279585 |
agcaaaggtgcaagtgaatacaacaggtcatattctttatttatttattaatggatttttgacgggtacacaacatggtaccgttagtcaacctggtttt |
279684 |
T |
|
| Q |
91 |
atacatgaagggaacatctctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgc |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
279685 |
atacatgaagggaacatctctttaaatcaaggtaccaatattataagtttattaagtgttacagtaggtcatgcaaattacggtgcgttctttgatatgc |
279784 |
T |
|
| Q |
191 |
aagaaactggcattgttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279785 |
aagaaactggcattgttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgg |
279884 |
T |
|
| Q |
291 |
gataaatggtatgactaaaaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtat |
390 |
Q |
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| T |
279885 |
gataaatggtatgactaaaaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtat |
279984 |
T |
|
| Q |
391 |
aagactactttcaagacccctgatggtacaaaccccgtagtcttggacttgataggccttcagaaaggagaagc |
464 |
Q |
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| T |
279985 |
aagactactttcaagacccctgatggtacaaaccccgtagtcttggacttgataggccttcagaaaggagaagc |
280058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 109 - 452
Target Start/End: Original strand, 290148 - 290491
Alignment:
| Q |
109 |
tctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttg |
208 |
Q |
| |
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||||| || |||||| |||||||||||||||| |||||||||||| |||| | |||||| ||| || | |||||||| |||||||||| ||||||| |
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| T |
290148 |
tctttgaaacaaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaagaaactggtattgttg |
290247 |
T |
|
| Q |
209 |
ggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaa |
308 |
Q |
| |
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| T |
290248 |
gcggtcctgcgaaactcatttcaactgaatatccaaacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtgtggctag |
290347 |
T |
|
| Q |
309 |
aaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacc |
408 |
Q |
| |
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||||||||||||||||||| | |||| || ||||| |||| ||||| |||||||||||||| || ||||||||||||||| ||||| |||||||||||| |
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| T |
290348 |
aaagttctatgatcccaaatctaccaatgtagttccatggcaaacacgtaatgtttctatagaaggaccaatgacttggtacaagaccactttcaagacc |
290447 |
T |
|
| Q |
409 |
cctgatggtacaaaccccgtagtcttggacttgataggccttca |
452 |
Q |
| |
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||||| ||| |||||| |||||| |||| |||||||| ||||| |
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| T |
290448 |
cctgaaggttcaaaccttgtagtcctggatttgataggtcttca |
290491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 120 - 452
Target Start/End: Original strand, 24531886 - 24532215
Alignment:
| Q |
120 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttgggggtcctgta |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| | |||||| ||| |||| |||||||| |||||||||| ||||||||||||| ||| |
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| T |
24531886 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttgggggtcatgtt |
24531985 |
T |
|
| Q |
220 |
aaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttctatg |
319 |
Q |
| |
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|||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||| |
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| T |
24531986 |
aaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtatggctagaaagttctatg |
24532085 |
T |
|
| Q |
320 |
atcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacccctgatggtac |
419 |
Q |
| |
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|||||||| | | |||||||| ||||| | || ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || | |
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| T |
24532086 |
atcccaaa---tctaatggagttccatggataccacgtaatgtttctataggagtaccaatgacttggtacaagaccactttcaagacccctgaagggtc |
24532182 |
T |
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| Q |
420 |
aaaccccgtagtcttggacttgataggccttca |
452 |
Q |
| |
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||||| |||||| |||| |||||||||||||| |
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| T |
24532183 |
aaaccttgtagtcctggatttgataggccttca |
24532215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 120 - 452
Target Start/End: Original strand, 24525213 - 24525543
Alignment:
| Q |
120 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttggggg-tcctgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| | |||||| ||| |||| |||||||| |||||||||| ||||||||||| || ||| |
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| T |
24525213 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttggggggtcatgt |
24525312 |
T |
|
| Q |
219 |
aaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttctat |
318 |
Q |
| |
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|||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |
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| T |
24525313 |
gaaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggatgaatggtatggctagaaagttctaa |
24525412 |
T |
|
| Q |
319 |
gatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacccctgatggta |
418 |
Q |
| |
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||||||| | | | |||||||| ||||| | || ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| | || |
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| T |
24525413 |
gatcccaga---tctaatggagttccatggataccacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctaaagggt |
24525509 |
T |
|
| Q |
419 |
caaaccccgtagtcttggacttgataggccttca |
452 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||| |
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|
| T |
24525510 |
caaaccttgtagtcctggatttgataggccttca |
24525543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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