View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3502_low_10 (Length: 248)

Name: NF3502_low_10
Description: NF3502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3502_low_10
NF3502_low_10
[»] chr4 (3 HSPs)
chr4 (18-248)||(27643539-27643769)
chr4 (18-244)||(50254259-50254485)
chr4 (18-248)||(50247122-50247352)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 27643769 - 27643539
Alignment:
Q  18 acttatatgccacgaaccaccttttcatgagaatatgccacgactcccttacccaaatttctattacgtgcttgaggatctagttacatcctatgcccct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27643769 acttatatgccacgaaccaccttttcatgagaatatgccacgactcccttacccaaatttctattacgtgcttgaggatctagttacatcctatgcccct 27643670  T
Q  118 tcggttacatactcgatacatcgatcctctatcataataggtatgtcaccaaggagtgcacacaacgtgctaatgaagctagcagtatatgctgccatat 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27643669 tcggttacatactcgatacatcgatcatctatcataataggtatgtcaccaaggagtgcacacaacgtgctaatgaagctagcagtatatgctgccatat 27643570  T
Q  218 gtcaccatttagggttaccttttcgttatcc 248  Q
    |||||||||||||||||||||||||||||||    
T  27643569 gtcaccatttagggttaccttttcgttatcc 27643539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 50254259 - 50254485
Alignment:
Q  18 acttatatgccacgaaccaccttttcatgagaatatgccacgactcccttacccaaatttctattacgtgcttgaggatctagttacatcctatgcccct 117  Q
    |||||| |||||||||||||||||  | ||||||||||| |||||| |||| |||||||||||||||| |||||||||||| |||| ||||||||| |||    
T  50254259 acttatctgccacgaaccacctttcgaagagaatatgcctcgactctcttatccaaatttctattacgcgcttgaggatctcgttaaatcctatgcacct 50254358  T
Q  118 tcggttacatactcgatacatcgatcctctatcataataggtatgtcaccaaggagtgcacacaacgtgctaatgaagctagcagtatatgctgccatat 217  Q
    ||  |||||||||| |||||||| ||||||||||||||||||   || ||||| |||||| ||||| |||| |||   |||||   ||| ||||||||||    
T  50254359 tcaattacatactcaatacatcgttcctctatcataataggtgcttcgccaagaagtgcatacaacatgctgatggtactagcgacatacgctgccatat 50254458  T
Q  218 gtcaccatttagggttaccttttcgtt 244  Q
    ||| |||  |||| ||||| |||||||    
T  50254459 gtcgccaggtaggattaccgtttcgtt 50254485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 50247122 - 50247352
Alignment:
Q  18 acttatatgccacgaaccaccttttcatgagaatatgccacgactcccttacccaaatttctattacgtgcttgaggatctagttacatcctatgcccct 117  Q
    ||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |||   ||||||||||| ||| |||| ||  | |||    
T  50247122 acttatatgccacgaaccaccttttaacgagaatatgcctcgactcccttacccaaatttctactacacacttgaggatctcgttgcatcatacacacct 50247221  T
Q  118 tcggttacatactcgatacatcgatcctctatcataataggtatgtcaccaaggagtgcacacaacgtgctaatgaagctagcagtatatgctgccatat 217  Q
    ||| |||||||||| ||||||||||||||| ||||||| ||    ||  |||| ||||||  ||||| | | |||| ||||||    |||||||| ||||    
T  50247222 tcgattacatactcaatacatcgatcctctctcataattggcgcatcttcaagaagtgcaatcaacgcgatgatgatgctagcgacgtatgctgcgatat 50247321  T
Q  218 gtcaccatttagggttaccttttcgttatcc 248  Q
    ||| |||| |||||||||| ||||| |||||    
T  50247322 gtcgccatgtagggttaccgtttcggtatcc 50247352  T

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