View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3502_low_2 (Length: 415)
Name: NF3502_low_2
Description: NF3502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3502_low_2 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 239 - 415
Target Start/End: Original strand, 3737036 - 3737212
Alignment:
| Q |
239 |
taagttgtatcagttgcttagttagtttgcacctgatgcagaaattaggagaacggaaaggcatatgaacaggaagacaatgtataatttgctagcagaa |
338 |
Q |
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| T |
3737036 |
taagttgtatcagttgcttagttagtttgtacctgatgcagaaattaggagaacggaaaggcatataaacaagaagacaatgtataatttgctagcagaa |
3737135 |
T |
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| Q |
339 |
gaaatcatgatttctaaatccaaataatgttccataaagaagtgaccaacacaatgtttgtgtctatatgtatatat |
415 |
Q |
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| T |
3737136 |
gaaatcatgatttctaaatccaaataatgttctataaagaagtgaccaacacaatgtttgtgtctatatgtatatat |
3737212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 3736803 - 3736972
Alignment:
| Q |
7 |
agtagcaaaggcaaaatgaaaaatatgggattggaggcacacaataaccgtaagttgcatggtctttgttgatgcaaacttcattacaattggacttatc |
106 |
Q |
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| T |
3736803 |
agtagcaaaagcaaaatgaaaaatatgggattgaaggcacacaataaccgtaagttgcatggtctttgttgatgcaaacttcattacaattggacttatc |
3736902 |
T |
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| Q |
107 |
acaaccatttgtatgctcaacatttgtatgatgcttaactctacaannnnnnncttttgcctctacacag |
176 |
Q |
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| T |
3736903 |
acaaccatttgtatgctcaacatttgtatgatgcttaactctacaatttttttcttttgcctctacacag |
3736972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 250 - 415
Target Start/End: Original strand, 3740420 - 3740588
Alignment:
| Q |
250 |
agttgcttagttagtttgcacctgatgcagaaattaggagaacggaaaggcatatgaacaggaagacaatgtataatttgctagcagaagaaatcatgat |
349 |
Q |
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| T |
3740420 |
agttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtagaatttactagtcgaggaaatcatgat |
3740519 |
T |
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| Q |
350 |
ttctaaatccaaataatgttccataaagaa---gtgaccaacacaatgtttgtgtctatatgtatatat |
415 |
Q |
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| T |
3740520 |
ttctaaatctaaatattggtctataaaaaaaatgttagcaacactatgtttgtgtctatatgtatatat |
3740588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 3729067 - 3729155
Alignment:
| Q |
7 |
agtagcaaaggcaaaatgaaaaatatgggattggaggcacacaataaccgtaagttgcatggtctttgttgatgcaaacttcattacaa |
95 |
Q |
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| T |
3729067 |
agtagcagaagcaaaatgaaaaatatgggattggaggcacacaataaccataagttgcatgttctatgttgatgcagacttcattacaa |
3729155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 3740187 - 3740284
Alignment:
| Q |
17 |
gcaaaatgaaaaatatgggattggaggcacacaataaccgtaagttgcatggtctttgttgatgcaaacttcattacaattggacttatcacaaccat |
114 |
Q |
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| T |
3740187 |
gcaaaatgaaaaatatgggtttggaagaagacaatcaccataagttgcatgctctatgttgatgcatacttcattacaagaggacttgtcacaaccat |
3740284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 3729307 - 3729412
Alignment:
| Q |
250 |
agttgcttagttagtttgcacctgatgcagaaattaggagaacggaaaggcatatgaacaggaagacaatgtataatttgctagcagaagaaatcatgat |
349 |
Q |
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| T |
3729307 |
agttgcttaaatagtttgtacctgatgtagaaataagaagaacgacgagacagatgaacatgaagacagtgcataatttactagttgaggaaatcatgat |
3729406 |
T |
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| Q |
350 |
ttctaa |
355 |
Q |
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| T |
3729407 |
ttctaa |
3729412 |
T |
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