View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3502_low_3 (Length: 404)

Name: NF3502_low_3
Description: NF3502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3502_low_3
NF3502_low_3
[»] chr4 (29 HSPs)
chr4 (270-379)||(31269152-31269260)
chr4 (270-379)||(37259746-37259854)
chr4 (270-379)||(37264433-37264541)
chr4 (270-383)||(12823770-12823882)
chr4 (270-379)||(31273639-31273747)
chr4 (270-384)||(55251832-55251945)
chr4 (270-379)||(19102095-19102203)
chr4 (270-379)||(47244366-47244474)
chr4 (270-379)||(5928088-5928196)
chr4 (270-379)||(8693829-8693937)
chr4 (272-379)||(19541032-19541138)
chr4 (270-379)||(19106726-19106834)
chr4 (270-379)||(16421147-16421255)
chr4 (270-362)||(13065685-13065777)
chr4 (270-361)||(51698051-51698142)
chr4 (273-379)||(13059528-13059632)
chr4 (298-379)||(31729284-31729364)
chr4 (270-353)||(40408344-40408427)
chr4 (273-379)||(48276521-48276626)
chr4 (318-379)||(4551115-4551175)
chr4 (273-379)||(19906368-19906473)
chr4 (298-361)||(5271316-5271379)
chr4 (314-372)||(2819969-2820026)
chr4 (290-379)||(33463245-33463333)
chr4 (329-379)||(42758683-42758732)
chr4 (299-344)||(7903005-7903050)
chr4 (273-361)||(15134287-15134375)
chr4 (273-305)||(31766001-31766033)
chr4 (289-340)||(33468861-33468913)
[»] chr3 (29 HSPs)
chr3 (270-379)||(758237-758345)
chr3 (270-379)||(23661333-23661441)
chr3 (270-379)||(23665992-23666100)
chr3 (270-379)||(24038240-24038348)
chr3 (270-379)||(46964131-46964239)
chr3 (270-379)||(3657109-3657217)
chr3 (270-375)||(29350360-29350464)
chr3 (270-379)||(7571087-7571195)
chr3 (270-379)||(20520170-20520278)
chr3 (273-379)||(2207621-2207726)
chr3 (270-372)||(55325898-55326000)
chr3 (270-379)||(18467341-18467449)
chr3 (270-379)||(18472123-18472231)
chr3 (270-361)||(3419128-3419218)
chr3 (273-379)||(32474551-32474657)
chr3 (298-379)||(14438592-14438672)
chr3 (270-379)||(39775597-39775705)
chr3 (270-379)||(55431431-55431539)
chr3 (270-379)||(49971297-49971401)
chr3 (298-379)||(27709052-27709132)
chr3 (275-379)||(25726663-25726765)
chr3 (273-379)||(12965745-12965850)
chr3 (299-379)||(8883286-8883365)
chr3 (273-379)||(12971505-12971610)
chr3 (270-314)||(10708546-10708592)
chr3 (299-379)||(3672702-3672781)
chr3 (299-379)||(3692734-3692813)
chr3 (299-379)||(6596255-6596334)
chr3 (299-344)||(10586082-10586127)
[»] chr2 (19 HSPs)
chr2 (273-379)||(31326857-31326961)
chr2 (270-379)||(1934862-1934970)
chr2 (270-361)||(25478167-25478258)
chr2 (270-379)||(28603421-28603529)
chr2 (270-379)||(12797043-12797151)
chr2 (270-379)||(19892335-19892443)
chr2 (270-361)||(25497195-25497286)
chr2 (275-361)||(40847473-40847560)
chr2 (273-379)||(29677885-29677990)
chr2 (273-379)||(30651047-30651152)
chr2 (298-379)||(9180621-9180701)
chr2 (298-379)||(9189700-9189780)
chr2 (270-350)||(17545168-17545247)
chr2 (298-379)||(18344549-18344629)
chr2 (289-361)||(21523613-21523685)
chr2 (299-379)||(35602040-35602119)
chr2 (273-379)||(7737723-7737828)
chr2 (326-379)||(29677499-29677551)
chr2 (299-379)||(30658381-30658460)
[»] chr6 (22 HSPs)
chr6 (270-379)||(17964428-17964536)
chr6 (270-375)||(11428131-11428235)
chr6 (270-361)||(6407730-6407821)
chr6 (270-379)||(33687472-33687580)
chr6 (270-378)||(11534580-11534687)
chr6 (270-378)||(11560090-11560197)
chr6 (270-361)||(11570618-11570709)
chr6 (270-361)||(19995272-19995363)
chr6 (270-361)||(29892130-29892221)
chr6 (270-379)||(12406222-12406330)
chr6 (270-337)||(25314326-25314393)
chr6 (270-337)||(26201820-26201887)
chr6 (270-379)||(2699976-2700083)
chr6 (270-379)||(4157238-4157346)
chr6 (270-379)||(12689089-12689197)
chr6 (270-349)||(21309161-21309240)
chr6 (290-339)||(11613656-11613705)
chr6 (298-375)||(16836053-16836129)
chr6 (273-349)||(5856155-5856230)
chr6 (273-379)||(14509102-14509207)
chr6 (270-324)||(17913769-17913823)
chr6 (299-379)||(24589062-24589141)
[»] chr7 (27 HSPs)
chr7 (270-379)||(4930351-4930459)
chr7 (270-379)||(44423006-44423114)
chr7 (270-379)||(26341317-26341425)
chr7 (270-379)||(27238360-27238468)
chr7 (270-361)||(12799545-12799636)
chr7 (273-379)||(10388239-10388344)
chr7 (270-379)||(8268411-8268520)
chr7 (270-379)||(13314106-13314213)
chr7 (270-379)||(30258218-30258326)
chr7 (270-382)||(13142770-13142881)
chr7 (270-361)||(3045690-3045781)
chr7 (270-361)||(3357500-3357591)
chr7 (273-379)||(3880113-3880218)
chr7 (270-375)||(42626460-42626564)
chr7 (276-379)||(25543237-25543339)
chr7 (12-82)||(6409625-6409695)
chr7 (270-361)||(12254214-12254304)
chr7 (273-379)||(26287017-26287122)
chr7 (270-379)||(44510546-44510654)
chr7 (270-379)||(3284846-3284954)
chr7 (289-350)||(23318131-23318191)
chr7 (299-344)||(27256393-27256438)
chr7 (329-379)||(4579626-4579675)
chr7 (275-379)||(21671313-21671416)
chr7 (299-344)||(40865252-40865297)
chr7 (299-344)||(19640449-19640494)
chr7 (299-379)||(23866186-23866265)
[»] chr1 (21 HSPs)
chr1 (270-379)||(19798882-19798990)
chr1 (273-379)||(25843874-25843979)
chr1 (273-379)||(40166098-40166203)
chr1 (270-379)||(26927591-26927699)
chr1 (270-379)||(33301049-33301157)
chr1 (273-379)||(8138057-8138162)
chr1 (270-379)||(39588236-39588344)
chr1 (273-379)||(23192690-23192795)
chr1 (270-379)||(38620810-38620918)
chr1 (273-379)||(28434446-28434551)
chr1 (298-379)||(16649510-16649590)
chr1 (270-337)||(51041332-51041399)
chr1 (270-314)||(47451095-47451139)
chr1 (298-361)||(10140231-10140294)
chr1 (277-379)||(16833602-16833703)
chr1 (316-379)||(10135574-10135636)
chr1 (273-350)||(11806505-11806582)
chr1 (273-379)||(16035726-16035830)
chr1 (301-379)||(18784457-18784534)
chr1 (299-344)||(8267729-8267774)
chr1 (299-340)||(41097851-41097892)
[»] chr8 (32 HSPs)
chr8 (270-361)||(24090757-24090848)
chr8 (270-361)||(44925793-44925884)
chr8 (270-379)||(1910838-1910946)
chr8 (270-379)||(2965748-2965856)
chr8 (270-379)||(36683697-36683805)
chr8 (270-379)||(23548499-23548609)
chr8 (270-361)||(33416681-33416772)
chr8 (275-379)||(34118584-34118687)
chr8 (270-361)||(15951424-15951514)
chr8 (273-379)||(19166752-19166857)
chr8 (273-379)||(40125757-40125862)
chr8 (279-361)||(17020473-17020555)
chr8 (279-361)||(17550910-17550992)
chr8 (289-379)||(18876255-18876344)
chr8 (298-379)||(1807591-1807671)
chr8 (273-361)||(28564692-28564779)
chr8 (273-361)||(28572315-28572402)
chr8 (273-379)||(17026053-17026158)
chr8 (273-379)||(17556545-17556650)
chr8 (316-379)||(38182152-38182214)
chr8 (270-309)||(38182125-38182164)
chr8 (329-379)||(15875596-15875645)
chr8 (289-355)||(24673222-24673287)
chr8 (299-344)||(34818598-34818643)
chr8 (301-344)||(8331258-8331301)
chr8 (273-308)||(28559537-28559572)
chr8 (299-379)||(4238239-4238318)
chr8 (299-379)||(4242978-4243057)
chr8 (299-379)||(31449764-31449843)
chr8 (299-344)||(37771862-37771907)
chr8 (272-316)||(12820502-12820546)
chr8 (270-314)||(26779282-26779325)
[»] chr5 (32 HSPs)
chr5 (270-361)||(35679745-35679836)
chr5 (270-379)||(6155288-6155396)
chr5 (270-379)||(29167842-29167950)
chr5 (273-379)||(39523167-39523272)
chr5 (270-379)||(12103143-12103251)
chr5 (270-379)||(26667390-26667498)
chr5 (270-379)||(26938987-26939095)
chr5 (270-379)||(40148013-40148121)
chr5 (273-379)||(39518528-39518633)
chr5 (270-379)||(12501768-12501876)
chr5 (270-379)||(20180932-20181040)
chr5 (270-379)||(36423755-36423863)
chr5 (270-379)||(36428827-36428935)
chr5 (290-375)||(37248685-37248769)
chr5 (270-361)||(10759690-10759781)
chr5 (289-379)||(41587050-41587137)
chr5 (270-349)||(12102699-12102782)
chr5 (270-378)||(34707407-34707513)
chr5 (273-379)||(9726560-9726664)
chr5 (273-379)||(11981152-11981257)
chr5 (270-379)||(6514469-6514578)
chr5 (298-379)||(7451876-7451956)
chr5 (299-379)||(556813-556892)
chr5 (299-379)||(561585-561664)
chr5 (273-335)||(4872082-4872145)
chr5 (273-379)||(12041804-12041909)
chr5 (299-344)||(13301381-13301426)
chr5 (299-344)||(1429893-1429938)
chr5 (299-344)||(21323865-21323910)
chr5 (299-379)||(32461447-32461526)
chr5 (299-379)||(36937409-36937488)
chr5 (299-379)||(36942163-36942242)
[»] scaffold0182 (1 HSPs)
scaffold0182 (270-379)||(9756-9864)
[»] scaffold0002 (2 HSPs)
scaffold0002 (273-372)||(443818-443916)
scaffold0002 (273-379)||(4192-4297)
[»] scaffold0352 (1 HSPs)
scaffold0352 (270-379)||(7222-7330)
[»] scaffold0054 (3 HSPs)
scaffold0054 (279-379)||(25517-25616)
scaffold0054 (270-302)||(25637-25669)
scaffold0054 (270-314)||(29341-29385)
[»] scaffold0240 (1 HSPs)
scaffold0240 (273-378)||(4092-4196)
[»] scaffold2020 (1 HSPs)
scaffold2020 (306-379)||(495-567)
[»] scaffold0061 (1 HSPs)
scaffold0061 (299-344)||(45935-45980)
[»] scaffold0017 (1 HSPs)
scaffold0017 (299-344)||(152807-152852)
[»] scaffold0009 (1 HSPs)
scaffold0009 (306-379)||(164928-165000)
[»] scaffold0690 (1 HSPs)
scaffold0690 (279-350)||(5436-5502)
[»] scaffold0060 (2 HSPs)
scaffold0060 (299-344)||(47756-47801)
scaffold0060 (299-344)||(52799-52844)
[»] scaffold0020 (1 HSPs)
scaffold0020 (299-344)||(1125-1170)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 31269260 - 31269152
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||    
T  31269260 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagt 31269162  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  31269161 gcagtagtta 31269152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 37259746 - 37259854
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||    
T  37259746 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagt 37259844  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  37259845 gcagtagtta 37259854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 37264433 - 37264541
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||    
T  37264433 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagt 37264531  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  37264532 gcagtagtta 37264541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 270 - 383
Target Start/End: Original strand, 12823770 - 12823882
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||||||||| || ||||||||||| |||||| ||||||| |||    
T  12823770 aacagagtggtaacaataccattttaaagtggtttcagtattaaagagtggtcttagtaccatattcgaaggtgtaaatctcgaacgg-ttttctacagt 12823868  T
Q  370 gcagtagttagccg 383  Q
    ||||||||||||||    
T  12823869 gcagtagttagccg 12823882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 31273747 - 31273639
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||    
T  31273747 aacagagtggttacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagt 31273649  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  31273648 gcagtagtta 31273639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 270 - 384
Target Start/End: Complemental strand, 55251945 - 55251832
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||  | ||||||||||| |||||| ||||||| |||    
T  55251945 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatattcaaaggtgtaaatctcgaacgg-ttttctacagt 55251847  T
Q  370 gcagtagttagccgt 384  Q
    |||||||||| ||||    
T  55251846 gcagtagttaaccgt 55251832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 19102203 - 19102095
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||    
T  19102203 aacagagtggtaacaataccatattaaaatggttttagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagt 19102105  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  19102104 gcagtagtta 19102095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 47244474 - 47244366
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||| ||| |||||| ||||||| |||    
T  47244474 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgggggtttaattctcgaacgg-ttttctacagt 47244376  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  47244375 gcagtagtta 47244366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 5928088 - 5928196
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| ||||||||||||  ||||||| |||||||| | ||||||| |||    
T  5928088 aacagagtggtaacaataccatattaaagtggtttaagtattaaagagtggtcttagtaccatatttggaggtgtaattcttgaac-gattttctacagt 5928186  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  5928187 gcagtagtta 5928196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 8693937 - 8693829
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||| |||| | ||||||| |||    
T  8693937 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattctcgaac-gattttctacagt 8693839  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  8693838 gcagtagtta 8693829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 272 - 379
Target Start/End: Original strand, 19541032 - 19541138
Alignment:
Q  272 cagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||  ||||||| ||| |||||| ||||||| | |||    
T  19541032 cagagtggtaacaatatcatattaaagtggtttcaatattaaagagtggtcttagtaccatatttggaggtgtaattctcgaacgg-ttttctacaatgc 19541130  T
Q  372 agtagtta 379  Q
    ||||||||    
T  19541131 agtagtta 19541138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 19106834 - 19106726
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| ||||||||| ||||||| |||||||| |||| ||||  |||||||||||||||||||| ||| |||||| ||||||| |||    
T  19106834 aacagagtggtaacaataccatattaaaatggtttctgtattaaagagtgatcttaataccatatttgagggtgtaattctcgaacgg-ttttctacagt 19106736  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  19106735 gcagtagtta 19106726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 16421255 - 16421147
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||| ||||||||  ||||||||||||||||| ||||||| ||||||||| |||||||||| || ||||||||||| | |||| ||||||| |||    
T  16421255 aacagagtgataacaatacaatattaaagtggtttcaatattaaagagtggtcttagtaccatattcgaaggtgtaaatctcggacgg-ttttctacagt 16421157  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  16421156 gcagtagtta 16421147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 270 - 362
Target Start/End: Original strand, 13065685 - 13065777
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggttttt 362  Q
    |||||| || |||||||| ||||||||||||||||| |||||||| |||||| || ||||||||||||||||||||||||| ||| |||||||    
T  13065685 aacagactgataacaataacatattaaagtggtttcggtattaaagagtggttttagtaccatatttgagggtgtaaatctcgaatggttttt 13065777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 51698142 - 51698051
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||||||| |||||| ||||||||||| |||||| ||||||| |||| |||| ||||||||||||||||||||| ||| ||||||||||    
T  51698142 aacagagtggtgacaataccatattaaagtagtttcaatattaaagagtgatcttagtaccatatttgagggtgtaattctcgaacggtttt 51698051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 13059632 - 13059528
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||||||||| | ||||||||||| ||||| ||||| |||||| ||||||| | ||||    
T  13059632 agagtggtaacaataccatattaaagtggtttcaatattaaagagtggtcttagaaccatatttgaaggtgt-aatctcgaacgg-ttttctacaatgca 13059535  T
Q  373 gtagtta 379  Q
    |||||||    
T  13059534 gtagtta 13059528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 31729284 - 31729364
Alignment:
Q  298 gtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||    
T  31729284 gtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagtgcagtagtta 31729364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 353
Target Start/End: Complemental strand, 40408427 - 40408344
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttga 353  Q
    ||||||||| |||||||| |||||||||||| ||||| ||||||| ||||||||| ||||||||||| ||  ||||||||||||    
T  40408427 aacagagtgctaacaataccatattaaagtgatttcaatattaaaaagtggtcttagtaccatatttaagaatgtaaatcttga 40408344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 48276521 - 48276626
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    |||||||||||| || ||||||||||||||||||||||| ||| | ||||||| |||||||||| || ||||||| ||| ||| || ||||||| |||||    
T  48276521 agagtggtaacagtaccatattaaagtggtttcagtattaaaagaatggtcttggtaccatattgga-ggtgtaattctcgaatgg-ttttctacagtgc 48276618  T
Q  372 agtagtta 379  Q
    ||||||||    
T  48276619 agtagtta 48276626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 4551175 - 4551115
Alignment:
Q  318 tggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||| ||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||    
T  4551175 tggtcttagtaccatatttgatggtgtaaatcttaaacgg-ttttctacagtgcagtagtta 4551115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 19906473 - 19906368
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    ||||||||||||||| ||||||| |||||||| |||||| ||| | ||||||| |||||||||| || ||||||| | | |||||| ||||||| || ||    
T  19906473 agagtggtaacaataccatattagagtggtttaagtattaaaagaatggtcttggtaccatattgga-ggtgtaattttcgaacgg-ttttctaaagcgc 19906376  T
Q  372 agtagtta 379  Q
    ||||||||    
T  19906375 agtagtta 19906368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 5271316 - 5271379
Alignment:
Q  298 gtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||||||||||||| ||||||||| | ||||||||||  ||||||| ||| ||||| ||||    
T  5271316 gtggtttcagtattaaagagtggtcttagcaccatatttggaggtgtaattctcgaacgatttt 5271379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 2820026 - 2819969
Alignment:
Q  314 atagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    ||||||||||| ||  ||||||||||||||||||||| |||| | ||||||||||||||    
T  2820026 atagtggtcttagtgtcatatttgagggtgtaaatctcgaac-gattttctatagtgca 2819969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 379
Target Start/End: Original strand, 33463245 - 33463333
Alignment:
Q  290 atattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    |||||||||||||||||||||| ||| | |||| || |||||||| |||| ||||||| ||| |||||| ||||||| | |||||||||||    
T  33463245 atattaaagtggtttcagtattaaaagaatggttttggtaccata-ttgaaggtgtaattctcgaacgg-ttttctacaatgcagtagtta 33463333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 42758683 - 42758732
Alignment:
Q  329 ccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    |||||||||||||||||| ||| |||||| ||||||| |||||||||||||    
T  42758683 ccatatttgagggtgtaattctcgaacgg-ttttctacagtgcagtagtta 42758732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 7903005 - 7903050
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||||| ||||||||| |||||||||| ||| ||||    
T  7903005 tggtttcagtattaaagagtggtcttagtaccatattagagagtgt 7903050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 15134375 - 15134287
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||| || ||||||  |||||| |||||||| ||||||||| | | | ||| ||||||||||| ||||| ||||||| |||| |||||    
T  15134375 agagtagtcacaatacgatattagagtggttttagtattaaagaatagccttagtaccatatttaagggtataaatctcgaacagtttt 15134287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 305
Target Start/End: Complemental strand, 31766033 - 31766001
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttc 305  Q
    ||||||||||||||| |||||||||||||||||    
T  31766033 agagtggtaacaataccatattaaagtggtttc 31766001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 340
Target Start/End: Original strand, 33468861 - 33468913
Alignment:
Q  289 catattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagg 340  Q
    ||||||||||||||||||||||| ||| | ||||||| |||||||||| ||||    
T  33468861 catattaaagtggtttcagtattaaaagaatggtcttggtaccatattggagg 33468913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 758237 - 758345
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||    
T  758237 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagt 758335  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  758336 gcagtagtta 758345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 23661333 - 23661441
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||    
T  23661333 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagt 23661431  T
Q  370 gcagtagtta 379  Q
    ||| ||||||    
T  23661432 gcattagtta 23661441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 23665992 - 23666100
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||    
T  23665992 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagt 23666090  T
Q  370 gcagtagtta 379  Q
    ||| ||||||    
T  23666091 gcattagtta 23666100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 24038240 - 24038348
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||    
T  24038240 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagt 24038338  T
Q  370 gcagtagtta 379  Q
    ||| ||||||    
T  24038339 gcattagtta 24038348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 46964239 - 46964131
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||| |||||| |||||||||||    
T  46964239 aacagagtggtaacaataccatatcaaagtggtttcagtattaaagagtggtcttaataccatatttgagggtgtaaatctcgaacgg-ttttctatagt 46964141  T
Q  370 gcagtagtta 379  Q
    ||| ||||||    
T  46964140 gcaatagtta 46964131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 3657109 - 3657217
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||| ||||||||| ||| |||| | ||||||| |||    
T  3657109 aacagagtggtaacaatatcatattaaagtggtttcagcattaaagagtggtcttagtaccatatttaagggtgtaattctcgaac-gattttctacagt 3657207  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  3657208 gcagtagtta 3657217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 375
Target Start/End: Complemental strand, 29350464 - 29350360
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||    
T  29350464 aacagagtggtaacaatatcatattaaagtgattttagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagt 29350366  T
Q  370 gcagta 375  Q
    ||||||    
T  29350365 gcagta 29350360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 7571087 - 7571195
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| ||||||||||||||||||||||||||  |||||||| ||||||||||||  ||||||| ||| |||||| ||||||| |||    
T  7571087 aacagagtggtaacaataccatattaaagtggtttcagtattaaagcgtggtcttagtaccatatttggaggtgtaattctcgaacgg-ttttctacagt 7571185  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  7571186 gcagtagtta 7571195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 20520278 - 20520170
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||| |||| | ||||||| |||    
T  20520278 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtactatatttgaaggtgtaaatctcgaacag-ttttctacagt 20520180  T
Q  370 gcagtagtta 379  Q
     |||||||||    
T  20520179 acagtagtta 20520170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 2207621 - 2207726
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||| || ||||||| ||| ||    
T  2207621 agagtggtaacaataccatataaaagtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaa-gggttttctacagtaca 2207719  T
Q  373 gtagtta 379  Q
    |||||||    
T  2207720 gtagtta 2207726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 270 - 372
Target Start/End: Complemental strand, 55326000 - 55325898
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||| ||| || ||| ||||||| |||    
T  55326000 aacagaatgataacaatatcatattaaagtggtttcagtattaaagagtggtcttagtaccgtatttaagggtgtaattctcgatcgggttttctacagt 55325901  T
Q  370 gca 372  Q
    |||    
T  55325900 gca 55325898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 18467449 - 18467341
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||||||||   |||||| ||| |||| | ||||||| |||    
T  18467449 aacagagtggtaacaataccatattaaaatggtttcagtattaaagagtggtcttagtaccatatttggaagtgtaattctcgaac-gattttctacagt 18467351  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  18467350 gcagtagtta 18467341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 18472231 - 18472123
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||| |||| | ||||||| | |    
T  18472231 aacaaagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattctcgaac-gattttctacaat 18472133  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  18472132 gcagtagtta 18472123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 3419218 - 3419128
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||  |||||||||    
T  3419218 aacagagcggtaacaatacaatattaaagtggtttcagtattaag-agtggtcttagtaccatatttgagggtgtaaatctcaaacggtttt 3419128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 32474551 - 32474657
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtcttt-gtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||   ||| ||| ||| |||| | ||||||| |||||    
T  32474551 agagtggtaacaatatcatattaaagtggtttcagtattaaagagtggtctttagtaccatatttagaggtataattctcgaac-gattttctacagtgc 32474649  T
Q  372 agtagtta 379  Q
    ||||||||    
T  32474650 agtagtta 32474657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 14438592 - 14438672
Alignment:
Q  298 gtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||    
T  14438592 gtggtttcaatattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagtgcagtagtta 14438672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 39775597 - 39775705
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||| ||||||||| ||||||||||||||||||||| |||| ||| ||||| ||||||||||||  ||||||| | | |||| | ||||||| |||    
T  39775597 aacagagtagtaacaataccatattaaagtggtttcagtagtaaagagttgtcttagtaccatatttggaggtgtaattttcgaac-gattttctacagt 39775695  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  39775696 gcagtagtta 39775705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 55431539 - 55431431
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||| |||||||  |||||||| ||||||| ||||| ||| ||||||||| |||||||||||||||||| || ||| |||| | ||||||| |||    
T  55431539 aacagagtgataacaatgccatattaaggtggtttaagtatcaaagagtggtcttagtaccatatttgagggtgcaattctcgaacag-ttttctacagt 55431441  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  55431440 gcagtagtta 55431431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 49971297 - 49971401
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||| |||||| |||||||||||    |||||||||||||||||| ||||||||  ||||||||||||||||||||| ||| |||||| ||||||| |||    
T  49971297 aacatagtggttacaatatcata----agtggtttcagtattaaagagtggtctcagtaccatatttgagggtgtaattctcgaacgg-ttttctacagt 49971391  T
Q  370 gcagtagtta 379  Q
    | ||||||||    
T  49971392 gaagtagtta 49971401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 379
Target Start/End: Complemental strand, 27709132 - 27709052
Alignment:
Q  298 gtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    |||||||||||||| || |||| |||| ||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||    
T  27709132 gtggtttcagtattgaagagtgatcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagtgcagtagtta 27709052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 25726663 - 25726765
Alignment:
Q  275 agtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagt 374  Q
    |||||| |||||| ||||||| | || |||||||||| || ||||||||| |||||||||| |||| ||||||||| |||||| ||||||| ||||||||    
T  25726663 agtggtcacaataccatattagaatgatttcagtatttaagagtggtcttagtaccatattggagg-tgtaaatctcgaacgg-ttttctacagtgcagt 25726760  T
Q  375 agtta 379  Q
    |||||    
T  25726761 agtta 25726765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 12965745 - 12965850
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    |||||||||| | || ||||||||||||||||||||||| ||| | ||||||| |||||||||| || ||||||| |||||||| | ||||||| |||||    
T  12965745 agagtggtaatattaccatattaaagtggtttcagtattaaaagaatggtcttggtaccatattgga-ggtgtaattcttgaacag-ttttctacagtgc 12965842  T
Q  372 agtagtta 379  Q
    | ||||||    
T  12965843 attagtta 12965850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 8883365 - 8883286
Alignment:
Q  299 tggtttcagtattaaa-tagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    |||||||||||||||| || |||||||||||||||| |||| ||||||| ||| |||||| ||||||| |||||||||||||    
T  8883365 tggtttcagtattaaaatattggtctttgtaccata-ttgaaggtgtaattctcgaacgg-ttttctacagtgcagtagtta 8883286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 12971505 - 12971610
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    |||||||||||| || |||||||||||||||| |||||| ||| | | ||||| |||||||||| || ||||||| ||| |||||| ||||||| | |||    
T  12971505 agagtggtaacagtaccatattaaagtggttttagtattaaaagattagtcttggtaccatattgga-ggtgtaattctcgaacgg-ttttctacaatgc 12971602  T
Q  372 agtagtta 379  Q
    ||||||||    
T  12971603 agtagtta 12971610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 10708546 - 10708592
Alignment:
Q  270 aacagagtggtaacaatatca--tattaaagtggtttcagtattaaa 314  Q
    ||||||||| |||||||||||  ||||||||||||||||||||||||    
T  10708546 aacagagtgttaacaatatcacatattaaagtggtttcagtattaaa 10708592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 3672781 - 3672702
Alignment:
Q  299 tggtttcagtattaaat-agtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||  | ||||||| |||||||||| || ||||||| ||| |||||||||| ||| |||||||||||||    
T  3672781 tggtttcagtattaaaagattggtcttagtaccatatt-gaaggtgtaattctcgaacggtttt-ctacagtgcagtagtta 3672702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 3692813 - 3692734
Alignment:
Q  299 tggtttcagtattaaat-agtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||  | ||||||| |||||||||| || ||||||| ||| |||||||||| ||| |||||||||||||    
T  3692813 tggtttcagtattaaaagattggtcttagtaccatatt-gaaggtgtaattctcgaacggtttt-ctacagtgcagtagtta 3692734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 6596255 - 6596334
Alignment:
Q  299 tggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||| ||| ||||||||| |||||||| |||| ||||||| ||| |||||| ||||||| | |||||||||||    
T  6596255 tggtttcagtattaaaagagtggtcttagtaccata-ttgaaggtgtaattctcgaacgg-ttttctacaatgcagtagtta 6596334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 10586082 - 10586127
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||||| | ||||||| |||||||||| ||||||||    
T  10586082 tggtttcagtattaaagaatggtcttagtaccatattagagggtgt 10586127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 31326961 - 31326857
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||| ||||||    
T  31326961 agagtggtaacaataccatattaaagtggtttcagtattaaatagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttcta-agtgca 31326864  T
Q  373 gtagtta 379  Q
    |||||||    
T  31326863 gtagtta 31326857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 1934862 - 1934970
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||    
T  1934862 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagt 1934960  T
Q  370 gcagtagtta 379  Q
    ||| ||||||    
T  1934961 gcattagtta 1934970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 25478167 - 25478258
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||    
T  25478167 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtactatatttgagggtgtaattcttgaacggtttt 25478258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 28603529 - 28603421
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||||  ||||||| ||||||||||||||| || |||    
T  28603529 aacagagtggtaacaataccatattaaagtggtttcaatattaaaaagtggtcttagtaccatatttggaggtgtaattcttgaacggttttt-tacagt 28603431  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  28603430 gcagtagtta 28603421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 12797151 - 12797043
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||| |||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| |||||||  ||    
T  12797151 aacagagtggttacaataccatattaaggtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacggt 12797053  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  12797052 gcagtagtta 12797043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 19892335 - 19892443
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||| |||| | ||||||| |||    
T  19892335 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattctcgaac-gattttctacagt 19892433  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  19892434 gcagtagtta 19892443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 25497195 - 25497286
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||| ||| ||||||||||||||||| ||| ||||||||||    
T  25497195 aacagagtggtaataataccatattaaagtggtttcaatattaaagagtggtcttagtatcatatttgagggtgtaattctcgaacggtttt 25497286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 40847473 - 40847560
Alignment:
Q  275 agtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgt-accatatttgagggtgtaaatcttgaacggtttt 361  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||||||||| |||||||||| ||||||||||    
T  40847473 agtggtaacaatatcatattaaagtggtttcaatattaaagagtggtcttggtaaccatatttgagagtgtaaatctcgaacggtttt 40847560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 29677990 - 29677885
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    |||||||||||| || |||||||||||||| ||| ||||||| ||||||||| |||||||||||| |||||||| ||| |||||| ||||||| ||||||    
T  29677990 agagtggtaacagtaccatattaaagtggtatcaatattaaagagtggtcttagtaccatatttgtgggtgtaattctcgaacgg-ttttctacagtgca 29677892  T
Q  373 gtagtta 379  Q
    |||||||    
T  29677891 gtagtta 29677885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 30651152 - 30651047
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    |||||||||||| |  |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||| |||| | |||||||  |||||    
T  30651152 agagtggtaacagtgccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattctcgaac-gattttctacggtgca 30651054  T
Q  373 gtagtta 379  Q
    |||||||    
T  30651053 gtagtta 30651047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 9180621 - 9180701
Alignment:
Q  298 gtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||| | ||||||| |||||||||||||    
T  9180621 gtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaac-gattttctacagtgcagtagtta 9180701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 9189700 - 9189780
Alignment:
Q  298 gtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||| | ||||||| |||||||||||||    
T  9189700 gtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaac-gattttctacagtgcagtagtta 9189780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 17545168 - 17545247
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatct 350  Q
    |||| |||||||||||||| | |||||||||||||| |||||||| ||||||||| ||| |||||||||||||||||||||    
T  17545168 aacaaagtggtaacaatat-agattaaagtggtttccgtattaaagagtggtcttagtatcatatttgagggtgtaaatct 17545247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 379
Target Start/End: Complemental strand, 18344629 - 18344549
Alignment:
Q  298 gtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||||||||||||| ||||||||||||  ||||||| ||| |||| | ||||||| |||||||||||||    
T  18344629 gtggtttcagtattaaatagtggtcttagtaccatatttggaggtgtaattctcgaac-gattttctacagtgcagtagtta 18344549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 361
Target Start/End: Original strand, 21523613 - 21523685
Alignment:
Q  289 catattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||||||| |||| ||| ||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||    
T  21523613 catattaaagtagtttaagttttaaagagtggtcttagtaccatatttgagggtgtaaatctcgaacgatttt 21523685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 35602119 - 35602040
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    |||||||| ||||||| ||||||||| ||||||||||||   |||||| ||| |||||| ||||||| |||||||||||||    
T  35602119 tggtttcaatattaaagagtggtcttagtaccatatttggatgtgtaattctcgaacgg-ttttctacagtgcagtagtta 35602040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 7737723 - 7737828
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    |||||||| ||||||||||||||||||| |||||||||| ||| | |||| || ||| |||||| || ||||||| ||| |||||| ||||||| |||||    
T  7737723 agagtggtgacaatatcatattaaagtgatttcagtattaaaagaatggttttggtatcatattgga-ggtgtaattctcgaacgg-ttttctacagtgc 7737820  T
Q  372 agtagtta 379  Q
    | ||||||    
T  7737821 aatagtta 7737828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 29677551 - 29677499
Alignment:
Q  326 gtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||    
T  29677551 gtaccatatttgagggtgtaattctcgaacgg-ttttctacagtgcagtagtta 29677499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 30658460 - 30658381
Alignment:
Q  299 tggtttcagtattaaata-gtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    |||||||||||||||| | || ||||| |||||||||| || ||||||| ||| |||||||||| ||| |||||||||||||    
T  30658460 tggtttcagtattaaaaaagttgtcttagtaccatatt-gaaggtgtaattctcgaacggtttt-ctacagtgcagtagtta 30658381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 17964428 - 17964536
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||| |||||| ||||||| |||    
T  17964428 aacagagtggtaacaatttcatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgaaggtgtaattctcgaacgg-ttttctacagt 17964526  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  17964527 gcagtagtta 17964536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 375
Target Start/End: Complemental strand, 11428235 - 11428131
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||| |||||| ||||||| |||    
T  11428235 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtagtcttagtaccatatttgatggtgtaaatctcgaacgg-ttttctacagt 11428137  T
Q  370 gcagta 375  Q
    ||||||    
T  11428136 gcagta 11428131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 6407730 - 6407821
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||||||||||||||    
T  6407730 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattcttgaacggtttt 6407821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 33687472 - 33687580
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||| |||||| || ||||||||||||||||||||||||| ||| || ||||||| | |    
T  33687472 aacagagtggtgacaatatcatattaaagtggtttcaatattaaagagtggttttagtaccatatttgagggtgtaaatctcgaa-ggattttctacaat 33687570  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  33687571 gcagtagtta 33687580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 378
Target Start/End: Original strand, 11534580 - 11534687
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| | |    
T  11534580 aacagagtggttacaataccatattaaagtggtttcaatattaaagagtggtcttagtaccatatttgagggtgtaattctggaacgg-ttttctacaat 11534678  T
Q  370 gcagtagtt 378  Q
    |||||||||    
T  11534679 gcagtagtt 11534687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 378
Target Start/End: Original strand, 11560090 - 11560197
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| | |    
T  11560090 aacagagtggttacaataccatattaaagtggtttcaatattaaagagtggtcttagtaccatatttgagggtgtaattctggaacgg-ttttctacaat 11560188  T
Q  370 gcagtagtt 378  Q
    |||||||||    
T  11560189 gcagtagtt 11560197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 11570618 - 11570709
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| ||| ||||||||||    
T  11570618 aacagagtggttacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgagggtataattctggaacggtttt 11570709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 19995272 - 19995363
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||| | || |||| |||||||||||||||||||| ||| ||||||    
T  19995272 aacaaagtggtaacaataccatattaaagtggtttcagtattaaatagtgtttttagtacgatatttgagggtgtaaatctcgaaaggtttt 19995363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 29892130 - 29892221
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    |||||||||||||||||| |||||||||| | ||||||||||||| |||| |||| ||||||||||||||||||||||| | ||| ||||||    
T  29892130 aacagagtggtaacaataccatattaaagcgatttcagtattaaagagtgatcttagtaccatatttgagggtgtaaatatcgaaaggtttt 29892221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 12406222 - 12406330
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||| | || ||| ||||||||||||| |||||||   |||| |||||||  ||    
T  12406222 aacagagtggtaacaataccatattaaagtggtttcagtattaaaaagtgattttagtatcatatttgagggtataaatctctcacgg-ttttctacggt 12406320  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  12406321 gcagtagtta 12406330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 337
Target Start/End: Original strand, 25314326 - 25314393
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttg 337  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  25314326 aacagagtggtaacaataccatattaaagtgatttcagtattaaagagtggtcttagtaccatatttg 25314393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 337
Target Start/End: Original strand, 26201820 - 26201887
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttg 337  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  26201820 aacagagtggtaacaataccatattaaagtgatttcagtattaaagagtggtcttagtaccatatttg 26201887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 2699976 - 2700083
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||| |||| ||||||||||||  ||||||| ||| ||   | ||||||| |||    
T  2699976 aacatagtggtaacaataccatattaaagtggtttcagtattaaagagtgatcttagtaccatatttggaggtgtaattctcga--cgattttctacagt 2700073  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  2700074 gcagtagtta 2700083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 4157238 - 4157346
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||| |||| | || | ||||||||| ||||||||||| | |||| | ||||||| |||    
T  4157238 aacagagcggtaacaataacatattaaagtgatttcagtattaaagagtgatattagcaccatatttaagggtgtaaatttcgaac-gattttctacagt 4157336  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  4157337 gcagtagtta 4157346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 12689197 - 12689089
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||| ||| |||||  ||||||| |||||||||||| | | |||||| ||||||| |||    
T  12689197 aacagagtggtaacaatacgatattaaagtggtttcaatattaaagagtcgtcttaataccataattgagggtgtaattgtcgaacgg-ttttctacagt 12689099  T
Q  370 gcagtagtta 379  Q
    | ||||||||    
T  12689098 gtagtagtta 12689089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 21309240 - 21309161
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatc 349  Q
    |||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||| ||||| ||||||| ||| ||||||    
T  21309240 aacagagtggtaacaataccatattaatgtgatttcagtattaaagagtggtcttagtaccgtatttgaaggtataaatc 21309161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 11613656 - 11613705
Alignment:
Q  290 atattaaagtggtttcagtattaaatagtggtctttgtaccatatttgag 339  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  11613656 atattaaagtggtttcagtattaaatagtgatcttagtaccatatttgag 11613705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 16836053 - 16836129
Alignment:
Q  298 gtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagta 375  Q
    ||||||||||||||||| ||||||||| |||||| || ||||||||||| ||| |||||| ||||||| |||||||||    
T  16836053 gtggtttcagtattaaagagtggtcttagtaccaaatatgagggtgtaattctcgaacgg-ttttctacagtgcagta 16836129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 5856230 - 5856155
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatc 349  Q
    ||||||||||||||| |||||||| ||||||||||||||| | |||| | ||  |||||||||||| ||||||||||    
T  5856230 agagtggtaacaataccatattaa-gtggtttcagtattatagagtgattttactaccatatttgaaggtgtaaatc 5856155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 14509207 - 14509102
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    |||||| ||||| || ||||||||||||||||||||||| ||| | ||||||| |||||||||| || ||||||| ||| |||| | ||||||| | |||    
T  14509207 agagtgataacagtaccatattaaagtggtttcagtattaaaagaatggtcttggtaccatattgga-ggtgtaattctcgaac-gattttctacaatgc 14509110  T
Q  372 agtagtta 379  Q
    ||||||||    
T  14509109 agtagtta 14509102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 17913823 - 17913769
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctt 324  Q
    ||||||||||||||||||   ||||||||| |||||||||||||| |||||||||    
T  17913823 aacagagtggtaacaatactgtattaaagtagtttcagtattaaagagtggtctt 17913769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 24589062 - 24589141
Alignment:
Q  299 tggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||| ||| ||||||||| |||||||| |||| ||||||| ||| |||||| ||||||| | |||||||||||    
T  24589062 tggtttcagtattaaaagagtggtcttagtaccata-ttgaaggtgtaattctcgaacgg-ttttctacaatgcagtagtta 24589141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 4930459 - 4930351
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||| |||||| ||||||| |||    
T  4930459 aacagagtggtaacaataccatattaaggtggtttcagtattaaagagtggtcttagtaccatatatgagggtgtaattctcgaacgg-ttttctacagt 4930361  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  4930360 gcagtagtta 4930351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 44423006 - 44423114
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||| || |||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||| |||    
T  44423006 aacagagtggtaacaataccatattaaggtagtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacagt 44423104  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  44423105 gcagtagtta 44423114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 26341425 - 26341317
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| |||||||  | ||||||| |||    
T  26341425 aacagagtggtaacaatatcatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattcttgaa-tgattttctacagt 26341327  T
Q  370 gcagtagtta 379  Q
    | ||||||||    
T  26341326 gtagtagtta 26341317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 27238468 - 27238360
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||| |||||||||| |||||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||| |||| | ||||||| |||    
T  27238468 aacaaagtggtaacattatcatattaaagtggtttcagaattaaagagtggtcttagtatcatatttgagggtgtaaatctcgaac-gattttctacagt 27238370  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  27238369 gcagtagtta 27238360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 12799636 - 12799545
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  12799636 aacaaagtggtaacaataccatattaaagtgatttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacggtttt 12799545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 10388239 - 10388344
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||| || ||||| ||||||||||||||||||| ||||  ||||| || ||||||    
T  10388239 agagtggtaacaataccatattaaagtggtttcagtattaaagagtggtattagtaccttatttgagggtgtaaatctcgaacaattttt-tagagtgca 10388337  T
Q  373 gtagtta 379  Q
    |||||||    
T  10388338 gtagtta 10388344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 8268520 - 8268411
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| ||||||||||||||||||||| |||| |||| |||| ||||||||||||  ||||||| | | ||||||||||||||  ||    
T  8268520 aacagagtggtaacaataccatattaaagtggtttcagtactaaagagtgatcttagtaccatatttggaggtgtaattatcgaacggtttttctacggt 8268421  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  8268420 gcagtagtta 8268411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 13314106 - 13314213
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||  ||||||| ||| |||||| ||||||| |||    
T  13314106 aacagagtggtaacaataccatattaaagtggtttcagtatt-aagagtggtcttagtaccatatttggaggtgtaattctcgaacgg-ttttctacagt 13314203  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  13314204 gcagtagtta 13314213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 30258326 - 30258218
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| | ||||   ||||||| |||    
T  30258326 aacatagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgaaggtgtaaatttcgaac-aattttctacagt 30258228  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  30258227 gcagtagtta 30258218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 270 - 382
Target Start/End: Original strand, 13142770 - 13142881
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||| |||| |||| ||||||||||| | ||||||||||| |||| | |||||||||||    
T  13142770 aacaaagtggtaacaataccatattaaagtggtttcaatattaaagagtgatcttagtaccatatttaacggtgtaaatctcgaacag-ttttctatagt 13142868  T
Q  370 gcagtagttagcc 382  Q
    ||| |||||||||    
T  13142869 gcaatagttagcc 13142881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 3045781 - 3045690
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||| || |||||| ||||||||||||||||||||||||| ||||| ||||    
T  3045781 aacagagtggtaacaataccatattaaaatggtttcaatattaaagagcggtcttagtaccatatttgagggtgtaaatctcgaacgatttt 3045690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 3357500 - 3357591
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||||||||||| || ||||||||||||||||| |||||||| |||| |||| ||||||||||| ||||||||||||||||||| ||||    
T  3357500 aacagagtggtaacagtaccatattaaagtggtttcggtattaaagagtgatcttagtaccatattttagggtgtaaatcttgaacgatttt 3357591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 3880218 - 3880113
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    |||||||||||| ||||||||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||||| ||| |||| | ||||||| ||||||    
T  3880218 agagtggtaacagtatcatattaaagtggtttcaatattaaagagtggtcttagtatcatatttgagagtgtaattctcgaac-gattttctacagtgca 3880120  T
Q  373 gtagtta 379  Q
    |||||||    
T  3880119 gtagtta 3880113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 270 - 375
Target Start/End: Original strand, 42626460 - 42626564
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||| ||||||| | ||||||| |||| |||| ||||||||||||||||||||| ||| |||| | ||||||| |||    
T  42626460 aacagagtggtaacaataccatattaaggtggttttaatattaaagagtgatcttagtaccatatttgagggtgtaattctcgaac-gattttctacagt 42626558  T
Q  370 gcagta 375  Q
    ||||||    
T  42626559 gcagta 42626564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 276 - 379
Target Start/End: Original strand, 25543237 - 25543339
Alignment:
Q  276 gtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagt 374  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||| |||| ||||||| ||| |||||| ||||||| ||||||||    
T  25543237 gtggtaacaataccatattaaagtggtttcagtattaaaagagtggtcttagtaccata-ttgaaggtgtaattctcgaacgg-ttttctacagtgcagt 25543334  T
Q  375 agtta 379  Q
    |||||    
T  25543335 agtta 25543339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 6409625 - 6409695
Alignment:
Q  12 gaagaatataatattgttgaggatgtgggagttcaagaaaatgatgtggttgaagatagcgatccagattc 82  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||    
T  6409625 gaagaaaataatattgttcaggatgtgggagttcaaaaaaatgaggtggttgaagatagcgatgcagattc 6409695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 12254304 - 12254214
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    |||||||||||| |||||||||||||||||||||||||||  ||| | ||| ||| ||||||||||||| |||||||||||  |||||||||    
T  12254304 aacagagtggtagcaatatcatattaaagtggtttcagtaggaaagactggacttagtaccatatttga-ggtgtaaatctcaaacggtttt 12254214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 26287017 - 26287122
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    |||||||||||| || ||||||||||||||||||||||| ||| | ||||||| |||||||||| || |||||||| || |||| | |||||||||||||    
T  26287017 agagtggtaacagtaccatattaaagtggtttcagtattaaaagaatggtcttggtaccatattgga-ggtgtaaagctcgaac-gattttctatagtgc 26287114  T
Q  372 agtagtta 379  Q
    ||||||||    
T  26287115 agtagtta 26287122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 44510546 - 44510654
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatag 368  Q
    |||||| |||||||||| |||||||||||||||||||||||| |||  |||||||| |||||||| |||| ||||||| ||| |||||| ||||||| ||    
T  44510546 aacagaatggtaacaatgtcatattaaagtggtttcagtattaaaagtgtggtcttagtaccata-ttgaaggtgtaattctcgaacgg-ttttctacag 44510643  T
Q  369 tgcagtagtta 379  Q
    ||||| |||||    
T  44510644 tgcagaagtta 44510654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 3284954 - 3284846
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||| |||| |||| | |||||||||||||||   |||||| ||||||||  ||||||||||||||||||||| ||| |||||| |||||||| ||    
T  3284954 aacagagtagtaaaaataccttattaaagtggtttcgacattaaagagtggtctcagtaccatatttgagggtgtaattctcgaacgg-ttttctattgt 3284856  T
Q  370 gcagtagtta 379  Q
    || |||||||    
T  3284855 gcggtagtta 3284846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 23318191 - 23318131
Alignment:
Q  289 catattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatct 350  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||||| || |||||||||||    
T  23318191 catattagagtggtttcagtattaaagagtggtcttagtaccatattgga-ggtgtaaatct 23318131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 27256438 - 27256393
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||    
T  27256438 tggtttcagtattaaatagtggtcttagtaccatattagagggtgt 27256393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 4579675 - 4579626
Alignment:
Q  329 ccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    |||||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  4579675 ccatatttgagggtgtaattcttgaacgg-ttttctacagtgcagtagtta 4579626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 379
Target Start/End: Complemental strand, 21671416 - 21671313
Alignment:
Q  275 agtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcag 373  Q
    |||||||| |||| |||||||||||||||||| |||| ||| | |||||||||| ||||||| || ||| ||||||| |||| | ||||||| | |||||    
T  21671416 agtggtaataataccatattaaagtggtttcattattaaaagaatggtctttgtcccatattgga-ggtttaaatctcgaac-gattttctacactgcag 21671319  T
Q  374 tagtta 379  Q
    ||||||    
T  21671318 tagtta 21671313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 40865252 - 40865297
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||||| ||||||||| |||||||||| ||||||||    
T  40865252 tggtttcagtattaaagagtggtcttagtaccatattagagggtgt 40865297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 19640494 - 19640449
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||| ||||||||| |||||| || |||||||||||||||||||    
T  19640494 tggttttagtattaaagagtggtgttagtaccatatttgagggtgt 19640449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 23866265 - 23866186
Alignment:
Q  299 tggtttcagtattaaat-agtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||| ||||||  ||||||||| |||||||||| || ||||||| ||| |||||||||| ||| |||||||||||||    
T  23866265 tggtttcagcattaaaagagtggtcttagtaccatatt-gaaggtgtaattctcgaacggtttt-ctacagtgcagtagtta 23866186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 19798882 - 19798990
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| || |||||||||| ||||||||||| |||||| ||||||| |||    
T  19798882 aacagagtggtaacaataccatattaaagtggttttagtattaaagagtggtcttagtgccatatttgaaggtgtaaatctcgaacgg-ttttctacagt 19798980  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  19798981 gcagtagtta 19798990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 25843979 - 25843874
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    ||||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||| |||||| ||||||| ||||||    
T  25843979 agagtggtaacaataccatattaaggtggtttcagtattaaagagtggtcttagtaccatatatgagggtgtaattctcgaacgg-ttttctacagtgca 25843881  T
Q  373 gtagtta 379  Q
    |||||||    
T  25843880 gtagtta 25843874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 40166203 - 40166098
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||  |||||||| | |||||| ||||||| ||||||    
T  40166203 agagtggtaacaatatcatattaaagtggtttcagtattaaagagtggtcttagtaccatattcgaatgtgtaaatttcgaacgg-ttttctacagtgca 40166105  T
Q  373 gtagtta 379  Q
    |||||||    
T  40166104 gtagtta 40166098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 26927591 - 26927699
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||| |||| | ||||||| |||    
T  26927591 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattctcgaac-gattttctacagt 26927689  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  26927690 gcagtagtta 26927699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 33301049 - 33301157
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||| ||||||||||||| ||||||| ||| |||| | ||||||| |||    
T  33301049 aacagagtggtaacaatatcatattaaagtggtttaagtattaacgagtggtcttagtaccatatttgaaggtgtaattctcgaacag-ttttctacagt 33301147  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  33301148 gcagtagtta 33301157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 8138162 - 8138057
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    |||||||||| | |||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||| ||| |||||| ||||||| | ||||    
T  8138162 agagtggtaagagtatcatattaaagtggtttcagtattaaagggtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctacattgca 8138064  T
Q  373 gtagtta 379  Q
    |||||||    
T  8138063 gtagtta 8138057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 39588236 - 39588344
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||| ||||||||| | ||||||  ||||||||||||  ||||||| ||| |||||| ||||||| | |    
T  39588236 aacagagtggtaacaataccatattaaagtggttttagtattaaagattggtctcagtaccatatttggaggtgtaattctcgaacgg-ttttctacact 39588334  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  39588335 gcagtagtta 39588344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 23192690 - 23192795
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    |||||||||||| |||||||||||||||||||||||||| ||| | ||||||| |||||||||| || ||||||| ||| |||||| ||||||| |||||    
T  23192690 agagtggtaacagtatcatattaaagtggtttcagtattaaaagaatggtcttggtaccatattgga-ggtgtaattctcgaacgg-ttttctacagtgc 23192787  T
Q  372 agtagtta 379  Q
    ||||||||    
T  23192788 agtagtta 23192795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 38620918 - 38620810
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||| || ||| |||||||||||| ||||||||||||| |||||||||  |||||||||| |||||||||||||  ||| | ||||||| | |    
T  38620918 aacagagtggtgacgataccatattaaagtgatttcagtattaaagagtggtcttaataccatattttagggtgtaaatctcaaacag-ttttctacaat 38620820  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  38620819 gcagtagtta 38620810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 28434446 - 28434551
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    |||||||||||| || ||||||||||||||||||||||| ||| | || ||||||||||||||| || ||||||||||| |||||| |||||||||||      
T  28434446 agagtggtaacagtaccatattaaagtggtttcagtattaaaagaatgatctttgtaccatattgga-ggtgtaaatctcgaacgg-ttttctatagtaa 28434543  T
Q  372 agtagtta 379  Q
    ||||||||    
T  28434544 agtagtta 28434551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 16649510 - 16649590
Alignment:
Q  298 gtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||| |||||| || ||||||||||||||||||||| ||| |||| | ||||||| |||||||||||||    
T  16649510 gtggtttcagtattaaagagtggtattagtaccatatttgagggtgtaattctcgaacag-ttttctacagtgcagtagtta 16649590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 337
Target Start/End: Original strand, 51041332 - 51041399
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttg 337  Q
    |||||||||||||||||  |||||||||||||||||| ||||||| |||| |||| ||||||||||||    
T  51041332 aacagagtggtaacaattccatattaaagtggtttcaatattaaagagtgatcttagtaccatatttg 51041399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 47451095 - 47451139
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaa 314  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  47451095 aacagagtggtaacaataccatattaaagtggtttcagtattaaa 47451139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 10140294 - 10140231
Alignment:
Q  298 gtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||||| ||||||| | ||||||| ||||||||||||||||||||| ||| ||||||||||    
T  10140294 gtggtttcaatattaaagaatggtcttagtaccatatttgagggtgtaattctcgaacggtttt 10140231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 379
Target Start/End: Complemental strand, 16833703 - 16833602
Alignment:
Q  277 tggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagta 375  Q
    ||||||||||| ||||||||||||||||||||||| ||| | ||||||| |||||||||| || ||||||| | | |||||| ||||||| | |||||||    
T  16833703 tggtaacaataccatattaaagtggtttcagtattaaaagaatggtcttggtaccatattgga-ggtgtaattttcgaacgg-ttttctacaatgcagta 16833606  T
Q  376 gtta 379  Q
    ||||    
T  16833605 gtta 16833602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 10135636 - 10135574
Alignment:
Q  316 agtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||| | || |||||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  10135636 agtggtcgtagtgccatatttgagggtgtaattcttgaacgg-ttttctacagtgcagtagtta 10135574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 350
Target Start/End: Complemental strand, 11806582 - 11806505
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatct 350  Q
    |||||||||| |||| ||||||||||| | || ||||||||| |||| |||| || ||||||||||  ||||||||||    
T  11806582 agagtggtaataataccatattaaagttgcttaagtattaaagagtgatcttagtgccatatttgaaagtgtaaatct 11806505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 16035830 - 16035726
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaa-atagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    ||||||||||||||| |||||||||||  ||| | |||||| ||| ||||||| |||||||||| || ||||| ||||| ||| || ||||||| |||||    
T  16035830 agagtggtaacaataccatattaaagtcattttaatattaacataatggtcttggtaccatattgga-ggtgt-aatctcgaatgg-ttttctaaagtgc 16035734  T
Q  372 agtagtta 379  Q
    ||||||||    
T  16035733 agtagtta 16035726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 18784457 - 18784534
Alignment:
Q  301 gtttcagtattaaat-agtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||  ||||||||| |||||||||| || ||||||| ||| |||||||||| ||| |||||||||||||    
T  18784457 gtttcagtattaaaagagtggtcttagtaccatatt-gaaggtgtaattctcgaacggtttt-ctacagtgcagtagtta 18784534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 8267729 - 8267774
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    ||||||||||||| || ||||||||| |||||||||| ||||||||    
T  8267729 tggtttcagtatttaagagtggtcttagtaccatattagagggtgt 8267774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 41097851 - 41097892
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagg 340  Q
    |||||||||||||||| ||||||||| |||||||||| ||||    
T  41097851 tggtttcagtattaaagagtggtcttagtaccatattagagg 41097892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 24090848 - 24090757
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||| ||||||||| ||||||||||    
T  24090848 aacagagtggtaacaatatcatattaaagtggtttcaatattaaagagtggtcttagtacaatatttgaggatgtaaatctcgaacggtttt 24090757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 44925793 - 44925884
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| ||| ||||||||||    
T  44925793 aacagagtggtaacagtatcatattaaagtggtttcagtattaaagagtggttttagtaccatatttgagggtgtaattctcgaacggtttt 44925884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 1910838 - 1910946
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||||||| || |||||||||||||||||||||||||| |||||||||  ||||||||||||  |||||||||| ||| || ||||||| |||    
T  1910838 aacagagtggtaacagtaccatattaaagtggtttcagtattaaagagtggtcttaataccatatttgaatgtgtaaatctcgaatgg-ttttctacagt 1910936  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  1910937 gcagtagtta 1910946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 2965856 - 2965748
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||||||||||  |||||||||| |||| ||||||||| ||||||||| |||||||||||||||||||||||||  || || ||||||| |||    
T  2965856 aacagagtggtaacaatactatattaaagtagttttagtattaaagagtggtcttagtaccatatttgagggtgtaaatctcaaatgg-ttttctacagt 2965758  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  2965757 gcagtagtta 2965748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 36683805 - 36683697
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| |||  ||| | ||||||| |||    
T  36683805 aacatagtggtaacaataccatattaaagtgatttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcaaac-gattttctacagt 36683707  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  36683706 gcagtagtta 36683697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 23548499 - 23548609
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtat--taaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctata 367  Q
    |||||||||||||||||| |||||||||||| |||||||||  |||||||||||||| ||| ||||||| |||||| ||||||||||||| ||||||| |    
T  23548499 aacagagtggtaacaataccatattaaagtgatttcagtattataaatagtggtcttagtatcatatttaagggtgaaaatcttgaacgg-ttttctaca 23548597  T
Q  368 gtgcagtagtta 379  Q
     |||||||||||    
T  23548598 atgcagtagtta 23548609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 33416772 - 33416681
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    |||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||| ||| ||||||||||    
T  33416772 aacagaatgataacaatatcatattaaagtggtttcagtattaaagagcggtcttagtaccgtatttgagggtgtaattctcgaacggtttt 33416681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 275 - 379
Target Start/End: Complemental strand, 34118687 - 34118584
Alignment:
Q  275 agtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagt 374  Q
    ||||||||||||| |||||||||||||||||| ||||||| ||||| ||| |||||||||| || ||||||||||| |||| | |||||||  |||||||    
T  34118687 agtggtaacaataccatattaaagtggtttcattattaaagagtggccttagtaccatattcgaaggtgtaaatctcgaacag-ttttctacggtgcagt 34118589  T
Q  375 agtta 379  Q
    |||||    
T  34118588 agtta 34118584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 15951424 - 15951514
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| |||||||| | ||  |||||||||| ||||||||||    
T  15951424 aacagagtggtaacaataccatattaaagtgatttcagtattaaagagtggtcttagtaccata-tcgaacgtgtaaatctcgaacggtttt 15951514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 19166857 - 19166752
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    ||||||||||| | | |||||||||||| ||| ||| ||||| | || |||| ||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  19166857 agagtggtaaccacaccatattaaagtgatttaagttttaaagaatgatcttagtaccatatttgagggtgtaattctcgaacgg-ttttctatagtgca 19166759  T
Q  373 gtagtta 379  Q
    |||||||    
T  19166758 gtagtta 19166752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 40125757 - 40125862
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    |||||||||||| |  |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||| |||| | |||||||  |||||    
T  40125757 agagtggtaacagtgccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattctcgaac-gattttctacggtgca 40125855  T
Q  373 gtagtta 379  Q
    |||||||    
T  40125856 gtagtta 40125862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 361
Target Start/End: Complemental strand, 17020555 - 17020473
Alignment:
Q  279 gtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||||| |||||||||| ||  ||||||||||  |||||||||    
T  17020555 gtaacaatatcatatgaaagtggtttcaatattaaagagtggtcttagtaccatattcgaatgtgtaaatctcaaacggtttt 17020473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 361
Target Start/End: Complemental strand, 17550992 - 17550910
Alignment:
Q  279 gtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||||| |||||||||| ||  ||||||||||  |||||||||    
T  17550992 gtaacaatatcatatgaaagtggtttcaatattaaagagtggtcttagtaccatattcgaatgtgtaaatctcaaacggtttt 17550910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 379
Target Start/End: Original strand, 18876255 - 18876344
Alignment:
Q  289 catattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    |||||||| ||||||||| ||||||| |||||| || ||| ||||||||||||||||| ||| |||||| ||||||| |||||||||||||    
T  18876255 catattaaggtggtttcaatattaaagagtggtattagtatcatatttgagggtgtaattctcgaacgg-ttttctacagtgcagtagtta 18876344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 379
Target Start/End: Complemental strand, 1807671 - 1807591
Alignment:
Q  298 gtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||| |||| |||| ||||||||||||| ||||||||||| |||||| ||||||| |||||| ||||||    
T  1807671 gtggtttcagtattaaagagtgatcttagtaccatatttgaaggtgtaaatctcgaacgg-ttttctacagtgcactagtta 1807591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 28564692 - 28564779
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||||||||||| ||||||||||||||||||  |||||| |||||||||  || |||| |||| ||||||| ||| ||||||||||    
T  28564692 agagtggtaacaataccatattaaagtggtttcaacattaaagagtggtcttactatcata-ttgaaggtgtaattctcgaacggtttt 28564779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 28572315 - 28572402
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    ||||||||||||||| ||||||||||||||||||  |||||| |||||||||  || |||| |||| ||||||| ||| ||||||||||    
T  28572315 agagtggtaacaataccatattaaagtggtttcaacattaaagagtggtcttactatcata-ttgaaggtgtaattctcgaacggtttt 28572402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 17026158 - 17026053
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    |||||||||| | || |||||||||||||||||| |||| ||| | ||||||| |||||||||| || ||||||| ||| |||||| ||||||| |||||    
T  17026158 agagtggtaatagtaccatattaaagtggtttcaatattaaaagaatggtcttggtaccatattgga-ggtgtaattctcgaacgg-ttttctacagtgc 17026061  T
Q  372 agtagtta 379  Q
    ||||||||    
T  17026060 agtagtta 17026053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 17556650 - 17556545
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    |||||||||| | || |||||||||||||||||| |||| ||| | ||||||| |||||||||| || ||||||| ||| |||||| ||||||| |||||    
T  17556650 agagtggtaatagtaccatattaaagtggtttcaatattaaaagaatggtcttggtaccatattgga-ggtgtaattctcgaacgg-ttttctacagtgc 17556553  T
Q  372 agtagtta 379  Q
    ||||||||    
T  17556552 agtagtta 17556545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 38182152 - 38182214
Alignment:
Q  316 agtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    |||||| || ||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  38182152 agtggttttagtaccatatttgaaggtgtaaatctcgaacggttttt-tatagtgcagtagtta 38182214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 38182125 - 38182164
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagta 309  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  38182125 aacagagtggtaacaatatcatattaaagtggttttagta 38182164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 15875596 - 15875645
Alignment:
Q  329 ccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||| |||||| |||||||||| |||||||||||||||||||||    
T  15875596 ccatatttgagagtgtaattcttgaacgg-ttttctatagtgcagtagtta 15875645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 24673222 - 24673287
Alignment:
Q  289 catattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaac 355  Q
    ||||||| ||||||||||  |||||| ||||||||| |||||||||| |||| ||||||||||||||    
T  24673222 catattagagtggtttcaacattaaaaagtggtcttagtaccatattggagg-tgtaaatcttgaac 24673287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 34818598 - 34818643
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||||| ||||||||| |||||||||| ||||||||    
T  34818598 tggtttcagtattaaagagtggtcttagtaccatattagagggtgt 34818643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 344
Target Start/End: Original strand, 8331258 - 8331301
Alignment:
Q  301 gtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||| ||||||||| |||||||||| ||||||||    
T  8331258 gtttcagtattaaagagtggtcttagtaccatattagagggtgt 8331301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 308
Target Start/End: Original strand, 28559537 - 28559572
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagt 308  Q
    ||||||||||||||| ||||||||||||||||||||    
T  28559537 agagtggtaacaataccatattaaagtggtttcagt 28559572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 4238239 - 4238318
Alignment:
Q  299 tggtttcagtattaaat-agtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||  | ||||||| |||||||||| || ||||||| ||| |||||||||| ||| |||||||||||||    
T  4238239 tggtttcagtattaaaagattggtcttagtaccatatt-gaaggtgtaattctcgaacggtttt-ctacagtgcagtagtta 4238318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 4242978 - 4243057
Alignment:
Q  299 tggtttcagtattaaat-agtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||  | ||||||| |||||||||| || ||||||| ||| |||||||||| ||| |||||||||||||    
T  4242978 tggtttcagtattaaaagattggtcttagtaccatatt-gaaggtgtaattctcgaacggtttt-ctacagtgcagtagtta 4243057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 31449764 - 31449843
Alignment:
Q  299 tggtttcagtattaaat-agtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||  | ||||||| |||||||||| || ||||||| ||| |||||||||| ||| |||||||||||||    
T  31449764 tggtttcagtattaaaagattggtcttagtaccatatt-gaaggtgtaattctcgaacggtttt-ctacagtgcagtagtta 31449843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 37771907 - 37771862
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||||| ||| ||||| |||||||||| ||||||||    
T  37771907 tggtttcagtattaaagagtagtcttggtaccatattagagggtgt 37771862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 12820546 - 12820502
Alignment:
Q  272 cagagtggtaacaatatcatattaaagtggtttcagtattaaata 316  Q
    ||||||||| |||||| ||||||| ||||||||||||| ||||||    
T  12820546 cagagtggtcacaataccatattagagtggtttcagtactaaata 12820502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 26779325 - 26779282
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaa 314  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||    
T  26779325 aacagagtgatatcaatatcatattaaa-tggtttcagtattaaa 26779282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 35679745 - 35679836
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| ||||    
T  35679745 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgatttt 35679836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 6155288 - 6155396
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||| |||||| ||||||| |||    
T  6155288 aacagagtggtaacaataccaaattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattctcgaacgg-ttttctacagt 6155386  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  6155387 gcagtagtta 6155396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 29167842 - 29167950
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||| |||| | ||||||| |||    
T  29167842 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattctcgaac-gattttctacagt 29167940  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  29167941 gcagtagtta 29167950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 39523272 - 39523167
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    |||||||||||| |  |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| |||||||||| ||||||| ||||||    
T  39523272 agagtggtaacagtgccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattcttgaacgg-ttttctacagtgca 39523174  T
Q  373 gtagtta 379  Q
    |||||||    
T  39523173 gtagtta 39523167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 12103251 - 12103143
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| |||| |||| ||||||||||| ||||||||| ||| |||| | ||||||| |||    
T  12103251 aacagagtggtaacaataccattttaaagtggtttcagtattaaagagtgatcttagtaccatatttaagggtgtaattctcgaac-gattttctacagt 12103153  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  12103152 gcagtagtta 12103143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 26667498 - 26667390
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||| |||| | ||||||| |||    
T  26667498 aacagagtgataacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattctcgaac-gattttctagagt 26667400  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  26667399 gcagtagtta 26667390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 26939095 - 26938987
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||| |||| | ||||||| |||    
T  26939095 aacagagtgataacaataccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattctcgaac-gattttctagagt 26938997  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  26938996 gcagtagtta 26938987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 40148121 - 40148013
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||| | ||||||||||||  ||||||| ||| |||||| ||||||| |||    
T  40148121 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcgtagtaccatatttggaggtgtaattctcgaacgg-ttttctacagt 40148023  T
Q  370 gcagtagtta 379  Q
    | ||||||||    
T  40148022 gtagtagtta 40148013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 39518633 - 39518528
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    |||||||||||| |  |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| |||||||||| ||||||| | ||||    
T  39518633 agagtggtaacagtgccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattcttgaacgg-ttttctacactgca 39518535  T
Q  373 gtagtta 379  Q
    |||||||    
T  39518534 gtagtta 39518528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 12501768 - 12501876
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||| ||||||||  ||||||| ||| |||| | ||||||| |||    
T  12501768 aacagagtggtaacagtaccatattaaagtggtttcggtattaaatagtggtcttagtatcatatttggaggtgtaattctcgaac-gattttctacagt 12501866  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  12501867 gcagtagtta 12501876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 20180932 - 20181040
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||| ||||| ||||| | |||||||||||||||| ||||||| ||||||||| ||| ||||||||||||||||||||| |||| | ||||||| |||    
T  20180932 aacagaatggtagcaataccgtattaaagtggtttcaatattaaagagtggtcttggtatcatatttgagggtgtaaatctcgaacag-ttttctacagt 20181030  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  20181031 gcagtagtta 20181040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 36423863 - 36423755
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||  ||||||| ||| |||| | ||||||| |||    
T  36423863 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagcaccatatttggaggtgtaattctcgaac-gattttctacagt 36423765  T
Q  370 gcagtagtta 379  Q
    ||| ||||||    
T  36423764 gcattagtta 36423755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 36428935 - 36428827
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||  ||||||| ||| || | | ||||||| |||    
T  36428935 aacagagtggtaacaataccatattaaagtggtttcagtattaaagagtggtcttagaaccatatttggaggtgtaattctcgagc-gattttctacagt 36428837  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  36428836 gcagtagtta 36428827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 290 - 375
Target Start/End: Original strand, 37248685 - 37248769
Alignment:
Q  290 atattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagta 375  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||||||| |||||    
T  37248685 atattaaagtggtttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctatagtacagta 37248769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 361
Target Start/End: Original strand, 10759690 - 10759781
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttt 361  Q
    |||||||||||||||||| || ||||||||||||||||||| | | ||||||||| ||||||||||||||||| ||| ||| ||||||||||    
T  10759690 aacagagtggtaacaataccacattaaagtggtttcagtatgacagagtggtcttagtaccatatttgagggtataattctcgaacggtttt 10759781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 379
Target Start/End: Original strand, 41587050 - 41587137
Alignment:
Q  289 catattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||  |||||| ||||||| |||||||||||||    
T  41587050 catattaaagtggtttcagtgttaaagagtggtcttagtaccatatttgagggtgtaattc--gaacgg-ttttctacagtgcagtagtta 41587137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 12102699 - 12102782
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttg----taccatatttgagggtgtaaatc 349  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |    ||||||||||||||||| |||||    
T  12102699 aacagagtggtaacaatgtcatattaaagtggtttcagtattaaagagtggtcttagtacataccatatttgagggtgaaaatc 12102782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 270 - 378
Target Start/End: Original strand, 34707407 - 34707513
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||| || |||||||| ||||||||| || ||||||||||||| ||||||||| ||||||||||| | ||||||||||| |||||| |||||||| ||    
T  34707407 aacagaatgataacaataacatattaaaatgatttcagtattaaagagtggtcttagtaccatattt-aaggtgtaaatctcgaacgg-ttttctatggt 34707504  T
Q  370 gcagtagtt 378  Q
    ||| |||||    
T  34707505 gcaatagtt 34707513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 9726560 - 9726664
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    ||||||||||||||| ||||| ||| |||||||||||||||| | |||||||  |||||||||| |  ||||||| ||||||||| ||||||| ||||||    
T  9726560 agagtggtaacaataccatatgaaaatggtttcagtattaaagaatggtcttaataccatattt-aaagtgtaaaccttgaacgg-ttttctacagtgca 9726657  T
Q  373 gtagtta 379  Q
    |||||||    
T  9726658 gtagtta 9726664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 11981152 - 11981257
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||| | ||||||| |||||||||| || ||||||| ||| |||||| ||||||| |||||    
T  11981152 agagtggtaacaataccatattaaagtggtttcggtattaaaagaatggtcttggtaccatattaga-ggtgtaattctcgaacgg-ttttctacagtgc 11981249  T
Q  372 agtagtta 379  Q
    | ||||||    
T  11981250 aatagtta 11981257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 6514469 - 6514578
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatag 368  Q
    ||||||||||||||||||  |||| |||||||||||| |||| ||| |||||| || ||||||||||||| ||||||||||| |||  | ||||||| |     
T  6514469 aacagagtggtaacaatacaatatcaaagtggtttcaatattaaaagagtggttttagtaccatatttgaaggtgtaaatctcgaa-tgattttctacaa 6514567  T
Q  369 tgcagtagtta 379  Q
    |||||||||||    
T  6514568 tgcagtagtta 6514578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 379
Target Start/End: Complemental strand, 7451956 - 7451876
Alignment:
Q  298 gtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||| |||||| ||||||| |||| ||||||||    
T  7451956 gtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattctcgaacgg-ttttctacagtgtagtagtta 7451876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 556892 - 556813
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    |||||||||||||| | ||||||||| ||||||||||||  ||||||| ||| |||||| ||||||| |||||||||||||    
T  556892 tggtttcagtattatagagtggtcttagtaccatatttggaggtgtaattctcgaacgg-ttttctacagtgcagtagtta 556813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 561664 - 561585
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    |||||||||||||| | ||||||||| ||||||||||||  ||||||| ||| |||||| ||||||| |||||||||||||    
T  561664 tggtttcagtattatagagtggtcttagtaccatatttggaggtgtaattctcgaacgg-ttttctacagtgcagtagtta 561585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 335
Target Start/End: Complemental strand, 4872145 - 4872082
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtatt-aaatagtggtctttgtaccatatt 335  Q
    |||||||||||| || |||||||||||||||||| |||| ||| | ||||||||||||||||||    
T  4872145 agagtggtaacagtaccatattaaagtggtttcattattaaaagaatggtctttgtaccatatt 4872082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 379
Target Start/End: Original strand, 12041804 - 12041909
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaat-agtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgc 371  Q
    |||||||||||| || |||||||| |||||||||||||||||  | ||  ||| |||||||||| |||| ||||| ||| |||| |||||| ||||||||    
T  12041804 agagtggtaacagtaccatattaatgtggtttcagtattaaaagaatgtacttggtaccatattggagg-tgtaattctcgaacagttttt-tatagtgc 12041901  T
Q  372 agtagtta 379  Q
    ||||||||    
T  12041902 agtagtta 12041909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 13301381 - 13301426
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||||| ||||||||| |||||||||| ||||||||    
T  13301381 tggtttcagtattaaagagtggtcttagtaccatattagagggtgt 13301426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 1429893 - 1429938
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||| ||||||| | ||||||| |||||||||||||||||||    
T  1429893 tggtttcaatattaaagaatggtcttagtaccatatttgagggtgt 1429938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 21323865 - 21323910
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||||| | ||||||| |||||||||| ||||||||    
T  21323865 tggtttcagtattaaagactggtcttagtaccatattagagggtgt 21323910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 32461447 - 32461526
Alignment:
Q  299 tggtttcagtattaaat-agtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||| ||||||  ||||||||| |||||||||| || ||||||| ||| |||||||||| ||| |||||||||||||    
T  32461447 tggtttcagcattaaaagagtggtcttagtaccatatt-gaaggtgtaattctcgaacggtttt-ctacagtgcagtagtta 32461526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 36937409 - 36937488
Alignment:
Q  299 tggtttcagtattaaat-agtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||  | ||||||| |||||||||| || ||||||| ||| |||||||||| ||| |||||||||||||    
T  36937409 tggtttcagtattaaaagattggtcttagtaccatatt-gaaggtgtaattctcgaacggtttt-ctacagtgcagtagtta 36937488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 36942163 - 36942242
Alignment:
Q  299 tggtttcagtattaaat-agtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||||||||||||||  | ||||||| |||||||||| || ||||||| ||| |||||||||| ||| |||||||||||||    
T  36942163 tggtttcagtattaaaagattggtcttagtaccatatt-gaaggtgtaattctcgaacggtttt-ctacagtgcagtagtta 36942242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 270 - 379
Target Start/End: Original strand, 9756 - 9864
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||  ||||||| ||| |||||| ||||||| |||    
T  9756 aacagagtggtaacaataccatattaaagtggtttcagtattatagagtggtcttagtaccatatttggaggtgtaattctcgaacgg-ttttctacagt 9854  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  9855 gcagtagtta 9864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 273 - 372
Target Start/End: Original strand, 443818 - 443916
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    |||||||| ||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  443818 agagtggttacaatatcatattaaggtgatttcagtattaaagagtggtcttagtaccatatttgagggtgtaattctcgaacgg-ttttctatagtgca 443916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 4297 - 4192
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    |||||||||||| |  |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||| ||| |||| | ||||||| ||||||    
T  4297 agagtggtaacagtgccatattaaagtggtttcagtattaaagagtggtcttagtaccatatttggaggtgtaattctcgaac-gattttctacagtgca 4199  T
Q  373 gtagtta 379  Q
    |||||||    
T  4198 gtagtta 4192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 7330 - 7222
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagt 369  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| |||||||||  ||| ||||||||||| |||| ||| |||||| ||||||| |||    
T  7330 aacagagtggtaacaataccatattaaggtggtttcagtattaaagagtggtcttaatacaatatttgagggcgtaattctcgaacgg-ttttctacagt 7232  T
Q  370 gcagtagtta 379  Q
    ||||||||||    
T  7231 gcagtagtta 7222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 279 - 379
Target Start/End: Complemental strand, 25616 - 25517
Alignment:
Q  279 gtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtt 378  Q
    |||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| | ||||| ||| |||||| ||||||| |||| |||||||    
T  25616 gtaataatatcatattaaagtggtttcaatattaaagagtggtcttagtaccatatttgaagatgtaagtctcgaacgg-ttttctacagtgtagtagtt 25518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 25669 - 25637
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggt 302  Q
    ||||||||||||| |||||||||||||||||||    
T  25669 aacagagtggtaataatatcatattaaagtggt 25637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 29385 - 29341
Alignment:
Q  270 aacagagtggtaacaatatcatattaaagtggtttcagtattaaa 314  Q
    ||||||||||||||||||  ||| |||| ||||||||||||||||    
T  29385 aacagagtggtaacaatactatactaaaatggtttcagtattaaa 29341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 378
Target Start/End: Complemental strand, 4196 - 4092
Alignment:
Q  273 agagtggtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgca 372  Q
    |||||||||||| || ||||  |||||| ||| ||||||||| ||||||||| ||||||||||| ||||| ||||||| ||| || ||||||| | ||||    
T  4196 agagtggtaacattaccataaaaaagtgatttaagtattaaagagtggtcttagtaccatatttaagggtataaatctcgaatgg-ttttctacaatgca 4098  T
Q  373 gtagtt 378  Q
    ||||||    
T  4097 gtagtt 4092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2020 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold2020
Description:

Target: scaffold2020; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 567 - 495
Alignment:
Q  306 agtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||| ||| ||||||||| ||||| |||||||||||||||||||  ||||| ||||||| |||||||||||||    
T  567 agtatgaaagagtggtcttagtaccgtatttgagggtgtaaatctcaaacgg-ttttctacagtgcagtagtta 495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 45980 - 45935
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||    
T  45980 tggtttcagtattaaagagtggtcttagtaccatatttgagggtgt 45935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 152807 - 152852
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||    
T  152807 tggtttcagtattaaagagtggtcttagtaccatatttgagggtgt 152852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 164928 - 165000
Alignment:
Q  306 agtattaaatagtggtctttgtaccatatttgagggtgtaaatcttgaacggtttttctatagtgcagtagtta 379  Q
    ||||| ||| ||||||||| ||||| |||||||||||||||||||  ||||| ||||||| |||||||||||||    
T  164928 agtatgaaagagtggtcttagtaccgtatttgagggtgtaaatctcaaacgg-ttttctacagtgcagtagtta 165000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 350
Target Start/End: Complemental strand, 5502 - 5436
Alignment:
Q  279 gtaacaatatcatattaaagtggtttcagtattaaatagtggtctttgtaccatatttgagggtgtaaatct 350  Q
    ||||||||| |||||||||||||||||| ||    | ||||||||| |||||||||||||||||||||||||    
T  5502 gtaacaata-catattaaagtggtttcatta----agagtggtcttagtaccatatttgagggtgtaaatct 5436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 47756 - 47801
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||||| ||||||||| |||||||||| ||||||||    
T  47756 tggtttcagtattaaagagtggtcttagtaccatattagagggtgt 47801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 52799 - 52844
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||||| ||||||||| |||||||||| ||||||||    
T  52799 tggtttcagtattaaagagtggtcttagtaccatattagagggtgt 52844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 1125 - 1170
Alignment:
Q  299 tggtttcagtattaaatagtggtctttgtaccatatttgagggtgt 344  Q
    |||||||||||||||| ||||||||| |||||||||| ||||||||    
T  1125 tggtttcagtattaaagagtggtcttagtaccatattagagggtgt 1170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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