View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3502_low_6 (Length: 373)
Name: NF3502_low_6
Description: NF3502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3502_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 6729197 - 6729529
Alignment:
| Q |
16 |
aatatggtggtgtttggtacttgggatagggtggtgtggagtaggaaaaattgtagtgtggaggagttgaaacggcgagactgaaaggtggcggtggata |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || |
|
|
| T |
6729197 |
aatatggtggtgtttggtacgtgggatagggtggtgtggagtaggaaaaattgtagtgtggaggagttgaaatggcgaaactgaaaggcgg--------- |
6729287 |
T |
|
| Q |
116 |
cggtggtggtggtggatagatcgatgtgttaacaatcggctgagtgaaatagccataggtttgggtttgcgaaagaggtacggtaaggggggtagtgtga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6729288 |
---------tggtggatagatcgatgtgttaacaatcggctgagtgaaatagccataggtttgggtttgtgaaagaggtacggtaaggggggtagtgtga |
6729378 |
T |
|
| Q |
216 |
tgaagtgataacagtgtagagaaaggaataaaatttgttgaggtagagaatggggttgttgcagatccagtgaaaggtgatgagtttgtgtgggttagag |
315 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
6729379 |
tgaagtgataacggtgtagagaaaagaataaaatttgttgaggtagagaatggggttgttgcagatctagtgaagggtgatgagtttgtgtgggttagag |
6729478 |
T |
|
| Q |
316 |
gtagtgtggtgttggatataggagtaaggactggttcaagcacaggttctg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6729479 |
gtagtgtggtgttggatataggagtaaggattggttcaagcacaggttctg |
6729529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 130
Target Start/End: Original strand, 26419501 - 26419529
Alignment:
| Q |
102 |
ggtggcggtggatacggtggtggtggtgg |
130 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26419501 |
ggtggcggtggatacggtggtggtggtgg |
26419529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University