View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3502_low_8 (Length: 289)
Name: NF3502_low_8
Description: NF3502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3502_low_8 |
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| [»] scaffold0129 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 116 - 274
Target Start/End: Complemental strand, 35427512 - 35427353
Alignment:
| Q |
116 |
tttaactacaacaattgaagagggatagttataaattcaaaacaaattaattatattcaatgtcaaaa-tccaactcgatccttaaagtgtaaatgagtt |
214 |
Q |
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| T |
35427512 |
tttaactacaacaattgaagagggatagttataaattaaaaacaaattaattatattcagtgtcaaaaatccaactcgatccttggagtgtaaatgagtt |
35427413 |
T |
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| Q |
215 |
atataaacaaatgatttgatttgagtgctagcggtgtgggactagaaggtgaaggatgtt |
274 |
Q |
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| T |
35427412 |
atataaacaaatgatttgatttgagtgctagcggtgtgggactagaaggtgaaggatgtt |
35427353 |
T |
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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 27831 - 27880
Alignment:
| Q |
209 |
tgagttatataaacaaatgatttgatttgagtgctagcggtgtgggacta |
258 |
Q |
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| T |
27831 |
tgagttatataaacaaataatttgctttgagtggaagcagtgtgggacta |
27880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 36088 - 36137
Alignment:
| Q |
209 |
tgagttatataaacaaatgatttgatttgagtgctagcggtgtgggacta |
258 |
Q |
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| T |
36088 |
tgagttatataaacaaataatttgctttgagtgcaagcaatgtgggacta |
36137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 13106500 - 13106472
Alignment:
| Q |
33 |
atggttgttcaaatatcatttctcatatt |
61 |
Q |
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| T |
13106500 |
atggttgttcaaatatcatttctcatatt |
13106472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 21156010 - 21155982
Alignment:
| Q |
33 |
atggttgttcaaatatcatttctcatatt |
61 |
Q |
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| T |
21156010 |
atggttgttcaaatatcatttctcatatt |
21155982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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